john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 55 results
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2012
Morgan CC, Shakya K, Webb A, Walsh TA, Lynch M, Loscher CE, Ruskin HJ, and O'Connell MJ. 2012. Colon cancer associated genes exhibit signatures of positive selection at functionally significant positions. BMC evolutionary biology 12:114.
Begley GC, and Ellis LM. 2012. Drug development: Raise standards for preclinical cancer research. Nature 483:531-3.
Chapman SJ, and Hill AVS. 2012. Human genetic susceptibility to infectious disease. Nature Reviews Genetics.
Chakravarti A, and Kapoor A. 2012. Mendelian Puzzles. Science 335:930 - 931.
Choi S-K, Yoon S-R, Calabrese P, and Arnheim N. 2012. Positive selection for new disease mutations in the human germline: evidence from the heritable cancer syndrome multiple endocrine neoplasia type 2B. PLoS genetics 8:e1002420.
Mitra D, Luo X, Morgan A, Wang J, Hoang MP, Lo J, Guerrero CR, Lennerz JK, Mihm MC, Wargo JA, et al. 2012. An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background. Nature.
2011
Gibbons A. 2011. Diabetes Genes Decline Out of Africa. Science 334:583 - 583.
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia K-S, Dimas AS, Hassanali N, et al. 2011. Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nature genetics 43:984-9.
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia K-S, Dimas AS, Hassanali N, et al. 2011. Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nature Genetics.
Bustamante CD, Burchard EG, and De la Vega FM. 2011. Genomics for the world. Nature 475:163-5.
Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admettla A, Pattini L, and Nielsen R. 2011. Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution. PLoS genetics 7:e1002355.
Wagner DD, Dal Cin S, Sargent JD, Kelley WM, and Heatherton TF. 2011. Spontaneous Action Representation in Smokers when Watching Movie Characters Smoke. J. Neurosci. [Internet] 31:894–898. Available from: http://dx.doi.org/10.1523/JNEUROSCI.5174-10.2011
Donath MY, and Shoelson SE. 2011. Type 2 diabetes as an inflammatory disease. Nature Reviews Immunology [Internet] 11:98–107. Available from: http://dx.doi.org/10.1038/nri2925
2010
Estrada AM, Prat EA, Sikora M, Engelken J, Soriano AR, Calafell F, and Bosch E. 2010. African signatures of recent positive selection in human FOXI1. BMC Evolutionary Biology [Internet] 10:267+. Available from: http://dx.doi.org/10.1186/1471-2148-10-267
Genovese G, Friedman DJ, Ross MD, Lecordier L, Uzureau P, Freedman BI, Bowden DW, Langefeld CD, Oleksyk TK, Uscinski Knob AL, et al. 2010. Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans. Science [Internet] 329:841–845. Available from: http://dx.doi.org/10.1126/science.1193032
Li J, Browning S, Mahal SP, Oelschlegel AM, and Weissmann C. 2010. Darwinian evolution of prions in cell culture. Science (New York, N.Y.) 327:869-72.
Carvalho CM, Zhang F, and Lupski JR. 2010. Evolution in health and medicine Sackler colloquium: Genomic disorders: a window into human gene and genome evolution. Proceedings of the National Academy of Sciences of the United States of America [Internet] 107 Suppl 1:1765–1771. Available from: http://dx.doi.org/10.1073/pnas.0906222107
Johansen CT, Wang J, Lanktree MB, Cao H, McIntyre AD, Ban MR, Martins RA, Kennedy BA, Hassell RG, Visser ME, et al. 2010. Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia. Nature genetics [Internet] 42:684–687. Available from: http://dx.doi.org/10.1038/ng.628
Corona E, Dudley JT, and Butte AJ. 2010. Extreme evolutionary disparities seen in positive selection across seven complex diseases. PloS one 5:e12236.
Feero GW, Guttmacher AE, and Manolio TA. 2010. Genomewide Association Studies and Assessment of the Risk of Disease. New England Journal of Medicine [Internet] 363:166–176. Available from: http://dx.doi.org/10.1056/NEJMra0905980
Antonarakis SE, Chakravarti A, Cohen JC, and Hardy J. 2010. Mendelian disorders and multifactorial traits: the big divide or one for all?. Nature reviews. Genetics [Internet] 11:380–384. Available from: http://dx.doi.org/10.1038/nrg2793
Bonmat\'ı A, Gómez-Olivencia A, Arsuaga J-L, Carretero JM, Gracia A, Mart\'ınez I, Lorenzo C, Bérmudez de Castro JM, and Carbonell E. 2010. Middle Pleistocene lower back and pelvis from an aged human individual from the Sima de los Huesos site, Spain. Proceedings of the National Academy of Sciences [Internet] 107:18386–18391. Available from: http://dx.doi.org/10.1073/pnas.1012131107
Tzur S, Rosset S, Shemer R, Yudkovsky G, Selig S, Tarekegn A, Bekele E, Bradman N, Wasser WG, Behar DM, et al. 2010. Missense mutations in the APOL1 gene are highly associated with end stage kidney disease risk previously attributed to the MYH9 gene. Human genetics [Internet] 128:345–350. Available from: http://dx.doi.org/10.1007/s00439-010-0861-0
Altman RB, Kroemer HK, McCarty CA, Ratain MJ, and Roden D. 2010. Pharmacogenomics: will the promise be fulfilled?. Nature Reviews Genetics [Internet] 12:69–73. Available from: http://dx.doi.org/10.1038/nrg2920
Fumagalli M, Cagliani R, Riva S, Pozzoli U, Biasin M, Piacentini L, Comi GP, Bresolin N, Clerici M, and Sironi M. 2010. Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 Diabetes. Molecular Biology and Evolution [Internet] 27:2555–2566. Available from: http://dx.doi.org/10.1093/molbev/msq141
Navlakha S, and Kingsford C. 2010. The power of protein interaction networks for associating genes with diseases. Bioinformatics (Oxford, England) [Internet] 26:1057–1063. Available from: http://dx.doi.org/10.1093/bioinformatics/btq076
Nakashima T, Matsuno K, Matsushita M, and Matsushita T. 2010. Severe lead contamination among children of samurai families in Edo period Japan. Journal of Archaeological Science [Internet]. Available from: http://dx.doi.org/10.1016/j.jas.2010.07.028
Rees DC, Williams TN, and Gladwin MT. 2010. Sickle-cell disease. The Lancet [Internet] 376:2018 - 2031. Available from: http://www.sciencedirect.com/science/article/pii/S014067361061029X
Guinan KJ, Cunningham RT, Meenagh A, Gonzalez A, Dring MM, McGuinness BW, Middleton D, and Gardiner CM. 2010. Signatures of natural selection and coevolution between killer cell immunoglobulin-like receptors (KIR) and HLA class I genes. Genes and Immunity [Internet] 11:467–478. Available from: http://dx.doi.org/10.1038/gene.2010.9
Holt-Lunstad J, Smith TB, and Layton BJ. 2010. Social relationships and mortality risk: a meta-analytic review. PLoS Med 7:e1000316.
Oleksyk TK, Nelson GW, An P, Kopp JB, and Winkler CA. 2010. Worldwide distribution of the MYH9 kidney disease susceptibility alleles and haplotypes: evidence of historical selection in Africa. PloS one [Internet] 5:e11474+. Available from: http://dx.doi.org/10.1371/journal.pone.0011474
2009
Smith EE, and Malik HS. 2009. The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host–pathogen interactions. Genome Research [Internet] 19:850–858. Available from: http://dx.doi.org/10.1101/gr.085647.108
Plomin R, Haworth CMA, and Davis OSP. 2009. Common disorders are quantitative traits. Nature Reviews Genetics [Internet] 10:872–878. Available from: http://dx.doi.org/10.1038/nrg2670
Tung J, Primus A, Bouley AJ, Severson TF, Alberts SC, and Wray GA. 2009. Evolution of a malaria resistance gene in wild primates. Nature [Internet] 460:388–391. Available from: http://dx.doi.org/10.1038/nature08149
Miller G, Chen E, and Cole SW. 2009. Health Psychology: Developing Biologically Plausible Models Linking the Social World and Physical Health. Annual Review of Psychology [Internet] 60:501–524. Available from: http://dx.doi.org/10.1146/annurev.psych.60.110707.163551
Rollins B, Martin MV, Sequeira AP, Moon EA, Morgan LZ, Watson SJ, Schatzberg A, Akil H, Myers RM, Jones EG, et al. 2009. Mitochondrial variants in schizophrenia, bipolar disorder, and major depressive disorder. PloS one [Internet] 4. Available from: http://dx.doi.org/10.1371/journal.pone.0004913
Cole SW. 2009. Social Regulation of Human Gene Expression. Current Directions in Psychological Science [Internet] 18:132–137. Available from: http://dx.doi.org/10.1111/j.1467-8721.2009.01623.x
2008
Zimmer C. 2008. Isolated Tribe Gives Clues to the Origins of Syphilis. Science 319:272 - 272.
2007
van Calcar SC, Gleason LA, Lindh H, Hoffman G, Rhead W, Vockley G, Wolff JA, and Durkin MS. 2007. 2-methylbutyryl-CoA dehydrogenase deficiency in Hmong infants identified by expanded newborn screen. WMJ 106:12-5.
Cacioppo JT, Amaral DG, Blanchard JJ, Cameron JL, Carter SC, Crews D, Fiske S, Heatherton T, Johnson MK, Kozak MJ, et al. 2007. Social Neuroscience: Progress and Implications for Mental Health. Perspectives on Psychological Science [Internet] 2:99–123. Available from: http://dx.doi.org/10.1111/j.1745-6916.2007.00032.x
Cole S, Hawkley L, Arevalo J, Sung C, Rose R, and Cacioppo J. 2007. Social regulation of gene expression in human leukocytes. Genome Biology [Internet] 8:R189+. Available from: http://dx.doi.org/10.1186/gb-2007-8-9-r189
2006
Larsen C. 2006. The agricultural revolution as environmental catastrophe: Implications for health and lifestyle in the Holocene. Quaternary International [Internet] 150:12–20. Available from: http://dx.doi.org/10.1016/j.quaint.2006.01.004
2005
Koepke N, and Baten J. 2005. The biological standard of living in Europe during the last two millennia. European Review of Economic History [Internet] 9:61–95. Available from: http://dx.doi.org/10.1017/S1361491604001388
Zick CD, Mathews CJ, Roberts SJ, Cook-Deegan R, Pokorski RJ, and Green RC. 2005. Genetic testing for Alzheimer's disease and its impact on insurance purchasing behavior. Health Aff (Millwood) 24:483-90.
2004
Rasinperä H, Savilahti E, Enattah NS, Kuokkanen M, Tötterman N, Lindahl H, Järvelä I, and Kolho K-L. 2004. A genetic test which can be used to diagnose adult-type hypolactasia in children. Gut 53:1571-6.
Steckel RH. 2004. New Light on the "Dark Ages": The Remarkably Tall Stature of Northern European Men during the Medieval Era. Social Science History [Internet] 28:211–229. Available from: http://dx.doi.org/10.1215/01455532-28-2-211
Rejnmark L, Jørgensen ME, Pedersen MB, Hansen JC, Heickendorff L, Lauridsen AL, Mulvad G, Siggaard C, Skjoldborg H, Sørensen TB, et al. 2004. Vitamin D Insufficiency in Greenlanders on a Westernized Fare: Ethnic Differences in Calcitropic Hormones Between Greenlanders and Danes. Calcified Tissue International [Internet] 74:255–263. Available from: http://dx.doi.org/10.1007/s00223-003-0110-9
2003
Bogin B, and Rios L. 2003. Rapid morphological change in living humans: implications for modern human origins. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 136:71-84.
Hwang J-Y, Shin C, Frongillo EA, Shin KR, and Jo I. 2003. Secular trend in age at menarche for South Korean women born between 1920 and 1986: the Ansan Study. Annals of Human Biology [Internet] 30:434–442. Available from: http://dx.doi.org/10.1080/0301446031000111393
2000
Koo WW, Walters JC, and Hockman EM. 2000. Body composition in human infants at birth and postnatally. The Journal of nutrition 130:2188-94.

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.