john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 45 results
Filters: Keyword is introgression  [Clear All Filters]
2013
Gokcumen O, Zhu Q, Mulder LCF, Iskow RC, Austermann C, Scharer CD, Raj T, Boss JM, Sunyaev S, Price A, et al. 2013. Balancing Selection on a Regulatory Region Exhibiting Ancient Variation That Predates Human–Neandertal Divergence. PLoS Genetics [Internet] 9:e1003404. Available from: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003404
Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, and Slatkin M. 2013. Higher Levels of Neanderthal Ancestry in East Asians Than in Europeans. Genetics.
Mendez FL, Watkins JC, and Hammer MF. 2013. Neandertal origin of genetic variation at the cluster of OAS immunity genes. Mol Biol Evol.
Condemi S, Mounier A, Giunti P, Lari M, Caramelli D, and Longo L. 2013. Possible Interbreeding in Late Italian Neanderthals? New Data from the Mezzena Jaw (Monti Lessini, Verona, Italy). PLoS ONE [Internet] 8:e59781. Available from: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0059781
2012
Yang MA, Malaspinas A-S, Durand EY, and Slatkin M. 2012. Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity. Molecular biology and evolution.
Dasmahapatra KK, Walters JR, Briscoe AD, Davey JW, Whibley A, Nadeau NJ, Zimin AV, Hughes DST, Ferguson LC, Martin SH, et al. 2012. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature.
Cronin MA, and Macneil MD. 2012. Genetic Relationships of Extant Brown Bears (Ursus arctos) and Polar Bears (Ursus maritimus). J Hered 103:873-81.
Charpentier MJE, Fontaine MC, Cherel E, Renoult JP, Jenkins T, Benoit L, Barthès N, Alberts SC, and Tung J. 2012. Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population. Molecular Ecology 21:715-31.
Alves I, Šrámková Hanulová A, Foll M, and Excoffier L. 2012. Genomic Data Reveal a Complex Making of Humans. PLoS Genetics 8:e1002837.
Mendez FL, Watkins JC, and Hammer MF. 2012. Global Genetic Variation at OAS1 Provides Evidence of Archaic Admixture in Melanesian Populations. Molecular biology and evolution 29:1513-20.
Lalueza-Fox C, Gigli E, Sánchez-Quinto F, de la Rasilla M, Fortea J, and Rosas A. 2012. Issues from Neandertal genomics: Diversity, adaptation and hybridisation revised from the El Sidrón case study. Quaternary International 247:10 - 14.
Sánchez-Quinto F, Botigué LR, Civit S, Arenas C, Ávila-Arcos MC, Bustamante CD, Comas D, and Lalueza-Fox C. 2012. North African Populations Carry the Signature of Admixture with Neandertals. PLoS ONE 7:e47765.
Hailer F, Kutschera VE, Hallström BM, Klassert D, Fain SR, Leonard JA, Arnason U, and Janke A. 2012. Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage. Science 336:344-7.
Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, et al. 2012. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc Natl Acad Sci U S A 109:E2382-90.
2011
Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, et al. 2011. Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol 21:1251-8.
Skoglund P, and Jakobsson M. 2011. Archaic human ancestry in East Asia. Proceedings of the National Academy of Sciences, U. S. A. 108:18301-18306.
Enk J, Devault A, Debruyne R, King C, Treangen T, O'Rourke D, Salzberg S, Fisher D, MacPhee R, and Poinar H. 2011. Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths. Genome Biology [Internet] 12:R51+. Available from: http://dx.doi.org/10.1186/gb-2011-12-5-r51
Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM-S, Ko Y-C, Jinam TA, Phipps ME, et al. 2011. Denisova admixture and the first modern human dispersals into southeast Asia and oceania. American journal of human genetics 89:516-28.
Wills C. 2011. Genetic and phenotypic consequences of introgression between humans and neanderthals. Advances in genetics 76:27-54.
Hammer MF, Woerner AE, Mendez FL, Watkins JC, and Wall JD. 2011. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences of the United States of America 108:15123-15128.
vonHoldt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, et al. 2011. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Research [Internet]. Available from: http://dx.doi.org/10.1101/gr.116301.110
Ghirotto S, Tassi F, Benazzo A, and Barbujani G. 2011. No evidence of Neandertal admixture in the mitochondrial genomes of early European modern humans and contemporary Europeans. American journal of physical anthropology 146:242-52.
Verhoeven KJF, Macel M, Wolfe LM, and Biere A. 2011. Population admixture, biological invasions and the balance between local adaptation and inbreeding depression. Proceedings of the Royal Society B: Biological Sciences [Internet] 278:2–8. Available from: http://dx.doi.org/10.1098/rspb.2010.1272
Tennessen JA, O'Connor TD, Bamshad MJ, and Akey JM. 2011. The promise and limitations of population exomics for human evolution studies. Genome biology 12:127.
Gibbons A. 2011. The Species Problem. Science [Internet] 331:394. Available from: http://dx.doi.org/10.1126/science.331.6016.394
Currat M, and Excoffier L. 2011. Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences 108:15129 - 15134.
Currat M, and Excoffier L. 2011. Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America 108:15129-34.
Durand EY, Patterson N, Reich D, and Slatkin M. 2011. Testing for ancient admixture between closely related populations. Molecular biology and evolution 28:2239-52.
2010
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PLF, et al. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature [Internet] 468:1053–1060. Available from: http://dx.doi.org/10.1038/nature09710
Lambert CA, Connelly CF, Madeoy J, Qiu R, Olson MV, and Akey JM. 2010. Highly Punctuated Patterns of Population Structure on the X Chromosome and Implications for African Evolutionary History. The American Journal of Human Genetics [Internet] 86:34–44. Available from: http://dx.doi.org/10.1016/j.ajhg.2009.12.002
Liu W, Jin C-Z, Zhang Y-Q, Cai Y-J, Xing S, Wu X-J, Cheng H, Edwards LR, Pan W-S, Qin D-G, et al. 2010. Human remains from Zhirendong, South China, and modern human emergence in East Asia. Proceedings of the National Academy of Sciences [Internet] 107:19201–19206. Available from: http://dx.doi.org/10.1073/pnas.1014386107
Lari M, Rizzi E, Milani L, Corti G, Balsamo C, Vai S, Catalano G, Pilli E, Longo L, Condemi S, et al. 2010. The microcephalin ancestral allele in a Neanderthal individual. PloS one 5:e10648.
Antón SC, Carter-Menn H, and DeLeon VB. 2010. Modern human origins: continuity, replacement, and masticatory robusticity in Australasia. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2010.08.004
Hodgson JA, Bergey CM, and Disotell TR. 2010. Neandertal genome: the ins and outs of African genetic diversity. Current biology : CB 20:R517-9.
Noonan JP. 2010. Neanderthal genomics and the evolution of modern humans. Genome research [Internet] 20:547–553. Available from: http://dx.doi.org/10.1101/gr.076000.108
Fumagalli M, Cagliani R, Riva S, Pozzoli U, Biasin M, Piacentini L, Comi GP, Bresolin N, Clerici M, and Sironi M. 2010. Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 Diabetes. Molecular Biology and Evolution [Internet] 27:2555–2566. Available from: http://dx.doi.org/10.1093/molbev/msq141
Ballingall KT, Rocchi MS, McKeever DJ, and Wright F. 2010. Trans-Species Polymorphism and Selection in the MHC Class II DRA Genes of Domestic Sheep. PLoS ONE [Internet] 5:e11402+. Available from: http://dx.doi.org/10.1371/journal.pone.0011402
2009
Lambert CA, and Tishkoff SA. 2009. Genetic structure in African populations: implications for human demographic history. Cold Spring Harbor symposia on quantitative biology [Internet] 74:395–402. Available from: http://dx.doi.org/10.1101/sqb.2009.74.053
2008
Hawks J, Cochran G, Harpending HC, and Lahn BT. 2008. A genetic legacy from archaic Homo. Trends in Genetics 24:19 - 23.
2006
Hawks J, and Cochran G. 2006. Dynamics of Adaptive Introgression from Archaic to Modern Humans. PaleoAnthropology 2006:101–115.
Plagnol V, and Wall JD. 2006. Possible ancestral structure in human populations. PLoS Genet 2:e105.
2005
Mallet J. 2005. Hybridization as an invasion of the genome. Invasions, guest edited by Michael E. Hochberg and Nicholas J. Gotelli [Internet] 20:229–237. Available from: http://dx.doi.org/10.1016/j.tree.2005.02.010
2002
Lee C. 2002. Evolutionary genetics of invasive species. Trends in Ecology & Evolution [Internet] 17:386–391. Available from: http://dx.doi.org/10.1016/S0169-5347(02)02554-5
1975
Thoma A. 1975. Were the Spy fossils evolutionary intermediates between Classic Neandertal and Modern Man?. Journal of Human Evolution 4:387 - 410.
0
van Heerwaarden J, Doebley J, Briggs WH, Glaubitz JC, Goodman MM, de Jesus Sanchez Gonzalez J, and Ross-Ibarra J.0 Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proceedings of the National Academy of Sciences [Internet]. Available from: http://dx.doi.org/10.1073/pnas.1013011108

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.