john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12805 results
2010
Ségurel L, Lafosse S, Heyer E, and Vitalis R. 2010. Frequency of the AGT Pro11Leu Polymorphism in Humans: does Diet Matter?. Annals of Human Genetics 74:57 - 64.
Goecks J, Nekrutenko A, Taylor J, and Team TG. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology [Internet] 11:R86+. Available from: http://dx.doi.org/10.1186/gb-2010-11-8-r86
Hoffmann FG, Opazo JC, and Storz JF. 2010. Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates. Proceedings of the National Academy of Sciences of the United States of America 107:14274-9.
Wilkens H. 2010. Genes, modules and the evolution of cave fish. Heredity [Internet] 105:413–422. Available from: http://dx.doi.org/10.1038/hdy.2009.184
O'Dushlaine C, McQuillan R, Weale ME, Crouch DJM, Johansson A, Aulchenko Y, Franklin CS, Polasek O, Fuchsberger C, Corvin A, et al. 2010. Genes predict village of origin in rural Europe. European Journal of Human Genetics [Internet] 18:1269–1270. Available from: http://dx.doi.org/10.1038/ejhg.2010.92
Melchior L, Lynnerup N, Siegismund HR, Kivisild T, and Dissing J. 2010. Genetic Diversity among Ancient Nordic Populations. PLoS ONE [Internet] 5:e11898+. Available from: http://dx.doi.org/10.1371/journal.pone.0011898
Xing J, Watkins SW, Hu Y, Huff C, Sabo A, Muzny D, Bamshad M, Gibbs R, Jorde L, and Yu F. 2010. Genetic diversity in India and the inference of Eurasian population expansion. Genome Biology [Internet] 11:R113+. Available from: http://dx.doi.org/10.1186/gb-2010-11-11-r113
Simonson TS, Yang Y, Huff CD, Yun H, Qin G, Witherspoon DJ, Bai Z, Lorenzo FR, Xing J, Jorde LB, et al. 2010. Genetic Evidence for High-Altitude Adaptation in Tibet. Science [Internet] 329:72–75. Available from: http://dx.doi.org/10.1126/science.1189406
McClellan J, and King M-C. 2010. Genetic heterogeneity in human disease. Cell 141:210-7.
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PLF, et al. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature [Internet] 468:1053–1060. Available from: http://dx.doi.org/10.1038/nature09710
Pritchard JK, Pickrell JK, and Coop G. 2010. The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation. Current Biology [Internet] 20:R208–R215. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.055
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, and Long AD. 2010. Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature [Internet] 467:587–590. Available from: http://dx.doi.org/10.1038/nature09352
Huyghe JR, Fransen E, Hannula S, Van Laer L, Van Eyken E, Maki-Torkko E, Aikio P, Sorri M, Huentelman MJ, and Camp GV. 2010. A genome-wide analysis of population structure in the Finnish Saami with implications for genetic association studies. European Journal of Human Genetics [Internet] aop. Available from: http://dx.doi.org/10.1038/ejhg.2010.179
Feero GW, Guttmacher AE, and Manolio TA. 2010. Genomewide Association Studies and Assessment of the Risk of Disease. New England Journal of Medicine [Internet] 363:166–176. Available from: http://dx.doi.org/10.1056/NEJMra0905980
Rosenberg NA, Huang L, Jewett EM, Szpiech ZA, Jankovic I, and Boehnke M. 2010. Genome-wide association studies in diverse populations. Nature Reviews Genetics [Internet] 11:356–366. Available from: http://dx.doi.org/10.1038/nrg2760
Docherty SJ, Davis OSP, Kovas Y, Meaburn EL, Dale PS, Petrill SA, Schalkwyk LC, and Plomin R. 2010. A genome-wide association study identifies multiple loci associated with mathematics ability and disability. Genes, Brain and Behavior [Internet] 9:234–247. Available from: http://dx.doi.org/10.1111/j.1601-183X.2009.00553.x
Verweij KJH, Zietsch BP, Medland SE, Gordon SD, Benyamin B, Nyholt DR, McEvoy BP, Sullivan PF, Heath AC, and Madden PAF. 2010. A genome-wide association study of Cloninger's temperament scales: Implications for the evolutionary genetics of personality. Biological Psychology [Internet] 85:306–317. Available from: http://dx.doi.org/10.1016/j.biopsycho.2010.07.018
Anney R, Klei L, Pinto D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS, Sykes N, Pagnamenta AT, et al. 2010. A genome-wide scan for common alleles affecting risk for autism. Human Molecular Genetics [Internet] 19:4072–4082. Available from: http://dx.doi.org/10.1093/hmg/ddq307
Behar DM, Yunusbayev B, Metspalu M, Metspalu E, Rosset S, Parik J, Rootsi S, Chaubey G, Kutuev I, Yudkovsky G, et al. 2010. The genome-wide structure of the Jewish people. Nature [Internet] 466:238–242. Available from: http://dx.doi.org/10.1038/nature09103
McClellan J, and King M-C. 2010. Genomic analysis of mental illness: a changing landscape. JAMA : the journal of the American Medical Association 303:2523-4.
Hodgkinson A, and Eyre-Walker A. 2010. The Genomic Distribution and Local Context of Coincident SNPs in Human and Chimpanzee. Genome Biology and Evolution [Internet] 2:547–557. Available from: http://dx.doi.org/10.1093/gbe/evq039
Rohland N, Reich D, Mallick S, Meyer M, Green RE, Georgiadis NJ, Roca AL, and Hofreiter M. 2010. Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and Savanna Elephants. PLoS Biol [Internet] 8:e1000564+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000564
White D, and Rabago-Smith M. 2010. Genotype–phenotype associations and human eye color. Journal of Human Genetics [Internet] 56:5–7. Available from: http://dx.doi.org/10.1038/jhg.2010.126
Svendsen JI, Heggen HP, Hufthammer AK, Mangerud J, Pavlov P, and Roebroeks W. 2010. Geo-archaeological investigations of Palaeolithic sites along the Ural Mountains – On the northern presence of humans during the last Ice Age. Quaternary Science Reviews [Internet]. Available from: http://dx.doi.org/10.1016/j.quascirev.2010.06.043
Piel FB, Patil AP, Howes RE, Nyangiri OA, Gething PW, Williams TN, Weatherall DJ, and Hay SI. 2010. Global distribution of the sickle cell gene and geographical confirmation of the malaria hypothesis. Nature Communications [Internet] 1:104+. Available from: http://dx.doi.org/10.1038/ncomms1104
Zhong H, Shi H, Qi X-BB, Xiao C-JJ, Jin L, Ma RZ, and Su B. 2010. Global distribution of Y-chromosome haplogroup C reveals the prehistoric migration routes of African exodus and early settlement in East Asia. Journal of human genetics [Internet] 55:428–435. Available from: http://dx.doi.org/10.1038/jhg.2010.40
Claw KG, Tito RY, Stone AC, and Verrelli BC. 2010. Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses. Molecular biology and evolution 27:1518-29.
Malmstrom H, Linderholm A, Liden K, Stora J, Molnar P, Holmlund G, Jakobsson M, and Gotherstrom A. 2010. High frequency of lactose intolerance in a prehistoric hunter-gatherer population in northern Europe. BMC Evolutionary Biology [Internet] 10:89+. Available from: http://dx.doi.org/10.1186/1471-2148-10-89
Lambert CA, Connelly CF, Madeoy J, Qiu R, Olson MV, and Akey JM. 2010. Highly Punctuated Patterns of Population Structure on the X Chromosome and Implications for African Evolutionary History. The American Journal of Human Genetics [Internet] 86:34–44. Available from: http://dx.doi.org/10.1016/j.ajhg.2009.12.002
Browning SR, and Browning BL. 2010. High-resolution detection of identity by descent in unrelated individuals. Am J Hum Genet 86:526-39.
Norton CJ, and Jin JJH. 2010. Hominin morphological and behavioral variation in eastern Asia and Australasia: Current perspectives. Quaternary International [Internet] 211:1–3. Available from: http://dx.doi.org/10.1016/j.quaint.2009.07.004
Dennell RW, Martinón-Torres M, and Bermúdez de Castro JM. 2010. Hominin variability, climatic instability and population demography in Middle Pleistocene Europe. Quaternary Science Reviews [Internet]. Available from: http://dx.doi.org/10.1016/j.quascirev.2009.11.027
Brumm A, Jensen GM, van den Bergh GD, Morwood MJ, Kurniawan I, Aziz F, and Storey M. 2010. Hominins on Flores, Indonesia, by one million years ago. Nature [Internet] 464:748–752. Available from: http://dx.doi.org/10.1038/nature08844
Agust\'ı J, and Lordkipanidze D. 2010. How ” African” was the early human dispersal out of Africa?. Quaternary Science Reviews [Internet]. Available from: http://dx.doi.org/10.1016/j.quascirev.2010.04.012
Nonaka T, Bril B, and Rein R. 2010. How do stone knappers predict and control the outcome of flaking? Implications for understanding early stone tool technology. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2010.04.006
Dehaene S, Pegado F, Braga LW, Ventura P, Nunes Filho G, Jobert A, Dehaene-Lambertz G, Kolinsky R, Morais J, and Cohen L. 2010. How learning to read changes the cortical networks for vision and language. Science (New York, N.Y.) [Internet] 330:1359–1364. Available from: http://dx.doi.org/10.1126/science.1194140
Texier P-J, Porraz G, Parkington J, Rigaud J-P, Poggenpoel C, Miller C, Tribolo C, Cartwright C, Coudenneau A, Klein R, et al. 2010. A Howiesons Poort tradition of engraving ostrich eggshell containers dated to 60,000 years ago at Diepkloof Rock Shelter, South Africa. Proceedings of the National Academy of Sciences [Internet] 107:6180–6185. Available from: http://dx.doi.org/10.1073/pnas.0913047107
Liu W, Wu X, Pei SW, and Wu X. 2010. Huanglong Cave: A Late Pleistocene human fossil site in Hubei Province, China. Quaternary International 211:29 - 41.
Summerhayes GR, Leavesley M, Fairbairn A, Mandui H, Field J, Ford A, and Fullagar R. 2010. Human Adaptation and Plant Use in Highland New Guinea 49,000 to 44,000 Years Ago. Science [Internet] 330:78–81. Available from: http://dx.doi.org/10.1126/science.1193130
Sin H-S, Koh E, Kim D-S, Murayama M, Sugimoto K, Maeda Y, Yoshida A, and Namiki M. 2010. Human endogenous retrovirus K14C drove genomic diversification of the Y chromosome during primate evolution. Journal of Human Genetics [Internet] 55:717–725. Available from: http://dx.doi.org/10.1038/jhg.2010.94
Stoneking M, and Delfin F. 2010. The Human Genetic History of East Asia: Weaving a Complex Tapestry. Current Biology [Internet] 20:R188–R193. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.052
Kayser M. 2010. The Human Genetic History of Oceania: Near and Remote Views of Dispersal. Current Biology [Internet] 20:R194–R201. Available from: http://dx.doi.org/10.1016/j.cub.2009.12.004
O'Rourke DH, and Raff JA. 2010. The Human Genetic History of the Americas: The Final Frontier. Current Biology [Internet] 20:R202–R207. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.051
Barbujani G, and Colonna V. 2010. Human genome diversity: frequently asked questions. Trends in genetics : TIG [Internet] 26:285–295. Available from: http://dx.doi.org/10.1016/j.tig.2010.04.002
Roberts T, McGreevy P, and Valenzuela M. 2010. Human Induced Rotation and Reorganization of the Brain of Domestic Dogs. PLoS ONE [Internet] 5:e11946+. Available from: http://dx.doi.org/10.1371/journal.pone.0011946
Bustamante CD, and Henn BM. 2010. Human origins: Shadows of early migrations. Nature [Internet] 468:1044–1045. Available from: http://dx.doi.org/10.1038/4681044a
Keinan A, and Reich D. 2010. Human Population Differentiation Is Strongly Correlated with Local Recombination Rate. PLoS Genet [Internet] 6:e1000886+. Available from: http://dx.doi.org/10.1371/journal.pgen.1000886
Liu W, Jin C-Z, Zhang Y-Q, Cai Y-J, Xing S, Wu X-J, Cheng H, Edwards LR, Pan W-S, Qin D-G, et al. 2010. Human remains from Zhirendong, South China, and modern human emergence in East Asia. Proceedings of the National Academy of Sciences [Internet] 107:19201–19206. Available from: http://dx.doi.org/10.1073/pnas.1014386107
Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F, Willer CJ, Jackson AU, Vedantam S, Raychaudhuri S, et al. 2010. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature [Internet] 467:832–838. Available from: http://dx.doi.org/10.1038/nature09410
Fu W, Zhang F, Wang Y, Gu X, and Jin L. 2010. Identification of Copy Number Variation Hotspots in Human Populations. The American Journal of Human Genetics [Internet] 87:494–504. Available from: http://dx.doi.org/10.1016/j.ajhg.2010.09.006

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.