john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12836 results
2011
Leakey M, Grossman A, Gutiérrez M, and Fleagle JG. 2011. Faunal Change in the Turkana Basin during the Late Oligocene and Miocene. Evolutionary Anthropology: Issues, News, and Reviews 20:238 - 253.
Zipfel B, DeSilva JM, Kidd RS, Carlson KJ, Churchill SE, and Berger LR. 2011. The Foot and Ankle of Australopithecus sediba. Science 333:1417 - 1420.
da Col G, and Graeber D. 2011. Foreword: The Return of Ethnographic Theory. HAU: Journal of Ethnographic Theory [Internet] 1:vi-xxxv. Available from: http://www.haujournal.org/index.php/hau/article/view/45/50
Boyer P. 2011. From Studious Irrelevancy to Consilient Knowledge: Modes of Scholarship and Cultural Anthropology. In: Slingerland E, Collard M Creating Consilience: Integrating the Sciences and the Humanities. Creating Consilience: Integrating the Sciences and the Humanities. Oxford, UK: Oxford University Press. p 113-129.
Anonymous. 2011. Full spectrum genetics. Nature genetics 44:1.
Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, et al. 2011. The functional spectrum of low-frequency coding variation. Genome biology 12:R84.
Christie MR, Marine ML, French RA, and Blouin MS. 2011. Genetic adaptation to captivity can occur in a single generation. Proceedings of the National Academy of Sciences of the United States of America.
Langergraber KE, Boesch C, Inoue E, Inoue-Murayama M, Mitani JC, Nishida T, Pusey A, Reynolds V, Schubert G, Wrangham RW, et al. 2011. Genetic and 'cultural' similarity in wild chimpanzees. Proceedings of the Royal Society B: Biological Sciences [Internet] 278:408–416. Available from: http://dx.doi.org/10.1098/rspb.2010.1112
Wills C. 2011. Genetic and phenotypic consequences of introgression between humans and neanderthals. Advances in genetics 76:27-54.
Langergraber K, Schubert G, Rowney C, Wrangham R, Zommers Z, and Vigilant L. 2011. Genetic differentiation and the evolution of cooperation in chimpanzees and humans. Proceedings. Biological sciences / The Royal Society 278:2546-52.
Hammer MF, Woerner AE, Mendez FL, Watkins JC, and Wall JD. 2011. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences of the United States of America 108:15123-15128.
Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, García-Tabernero A, García-Vargas S, Sánchez-Quinto F, Ramírez O, Civit S, et al. 2011. Genetic evidence for patrilocal mating behavior among Neandertal groups. Proc Natl Acad Sci U S A 108:250-3.
Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, Garcia-Tabernero A, Garcia-Vargas S, Sánchez-Quinto F, Ramirez O, Civit S, et al. 2011. Genetic evidence for patrilocal mating behavior among Neandertal groups. Proceedings of the National Academy of Sciences [Internet]. Available from: http://dx.doi.org/10.1073/pnas.1011553108
Sato T, Razhev D, Amano T, and Masuda R. 2011. Genetic features of ancient West Siberian people of the Middle Ages, revealed by mitochondrial DNA haplogroup analysis. Journal of Human Genetics 56:602 - 608.
Ober C, and Yao T-C. 2011. The genetics of asthma and allergic disease: a 21st century perspective. Immunological Reviews 242:10 - 30.
Davies G, Tenesa A, Payton A, Yang J, Harris SE, Liewald D, Ke X, Le Hellard S, Christoforou A, Luciano M, et al. 2011. Genome-wide association studies establish that human intelligence is highly heritable and polygenic. Mol Psychiatry 16:996-1005.
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia K-S, Dimas AS, Hassanali N, et al. 2011. Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nature genetics 43:984-9.
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia K-S, Dimas AS, Hassanali N, et al. 2011. Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nature Genetics.
vonHoldt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, et al. 2011. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Research [Internet]. Available from: http://dx.doi.org/10.1101/gr.116301.110
Bustamante CD, Burchard EG, and De la Vega FM. 2011. Genomics for the world. Nature 475:163-5.
Pruvost M, Bellone R, Benecke N, Sandoval-Castellanos E, Cieslak M, Kuznetsova T, Morales-Muñiz A, O'Connor T, Reissmann M, Hofreiter M, et al. 2011. Genotypes of predomestic horses match phenotypes painted in Paleolithic works of cave art. Proceedings of the National Academy of Sciences of the United States of America.
Stiner MC, Gopher A, and Barkai R. 2011. Hearth-side socioeconomics, hunting and paleoecology during the late Lower Paleolithic at Qesem Cave, Israel. Journal of Human Evolution 60:213 - 233.
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, et al. 2011. A high-resolution map of human evolutionary constraint using 29 mammals. Nature.
Gunnarsdóttir ED, Li M, Bauchet M, Finstermeier K, and Stoneking M. 2011. High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research [Internet] 21:1–11. Available from: http://dx.doi.org/10.1101/gr.107615.110
Krzywinski M, Birol I, Jones SJ, and Marra MA. 2011. Hive plots--rational approach to visualizing networks. Briefings in bioinformatics.
O'Regan HJ, Turner A, Bishop LC, Elton S, and Lamb AL. 2011. Hominins without fellow travellers? First appearances and inferred dispersals of Afro-Eurasian large-mammals in the Plio-Pleistocene. Quaternary Science Reviews 30:1343 - 1352.
Turelli M, and Langley C. 2011. Honoring our colleague James F. Crow, an outstanding gentleman, citizen, and scientist. Genetics 189:1127.
Tenenbaum JB, Kemp C, Griffiths TL, and Goodman ND. 2011. How to grow a mind: statistics, structure, and abstraction. Science (New York, N.Y.) [Internet] 331:1279–1285. Available from: http://dx.doi.org/10.1126/science.1192788
Medina TN, Snedeker J, Trueswell JC, and Gleitman LR. 2011. How words can and cannot be learned by observation. Proceedings of the National Academy of Sciences [Internet] 108:9014–9019. Available from: http://dx.doi.org/10.1073/pnas.1105040108
Roksandic M, Mihailović D, Mercier N, Dimitrijević V, Morley MW, Rakočević Z, Mihailović B, Guibert P, and Babb J. 2011. A human mandible (BH-1) from the Pleistocene deposits of Mala Balanica cave (Sićevo Gorge, Niš, Serbia). Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2011.03.003
McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, Guenther C, Indjeian VB, Lim X, Menke DB, Schaar BT, et al. 2011. Human-specific loss of regulatory DNA and the evolution of human-specific traits. Nature [Internet] 471:216–219. Available from: http://dx.doi.org/10.1038/nature09774
Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Kidd JM, Rodr\'ıguez-Botigué L, Ramachandran S, Hon L, Brisbin A, et al. 2011. Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proceedings of the National Academy of Sciences [Internet] 108:5154–5162. Available from: http://dx.doi.org/10.1073/pnas.1017511108
Guba Z, Hadadi É, Major Á, Furka T, Juhász E, Koós J, Nagy K, and Zeke T. 2011. HVS-I polymorphism screening of ancient human mitochondrial DNA provides evidence for N9a discontinuity and East Asian haplogroups in the Neolithic Hungary. Journal of Human Genetics.
Sanchez-Mazas A, Fernandez-Viña M, Middleton D, Hollenbach JA, Buhler S, Di D, Rajalingam R, Dugoujon J-M, Mack SJ, and Thorsby E. 2011. Immunogenetics as a tool in anthropological studies. Immunology [Internet] 133:143–164. Available from: http://dx.doi.org/10.1111/j.1365-2567.2011.03438.x
Hobolth A, Dutheil JY, Hawks J, Schierup MH, and Mailund T. 2011. Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection. Genome research 21:349-56.
Vigilant L, and Langergraber KE. 2011. Inconclusive evidence for patrilocality in Neandertals. Proc Natl Acad Sci U S A 108:E87; author reply E88.
Freeman S, Haak D, and Wenderoth MP. 2011. Increased course structure improves performance in introductory biology. CBE life sciences education 10:175-86.
Haak DC, HilleRisLambers J, Pitre E, and Freeman S. 2011. Increased structure and active learning reduce the achievement gap in introductory biology. Science (New York, N.Y.) 332:1213-6.
Li H, and Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature [Internet] 475:493–496. Available from: http://dx.doi.org/10.1038/nature10231
Campbell MW, and de Waal FBM. 2011. Ingroup-Outgroup Bias in Contagious Yawning by Chimpanzees Supports Link to Empathy. PLoS ONE [Internet] 6:e18283+. Available from: http://dx.doi.org/10.1371/journal.pone.0018283
Batini C, Lopes J, Behar DM, Calafell F, Jorde LB, van der Veen L, Quintana-Murci L, Spedini G, Destro-Bisol G, and Comas D. 2011. Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes. Molecular Biology and Evolution [Internet] 28:1099–1110. Available from: http://dx.doi.org/10.1093/molbev/msq294
Hartl DL. 2011. James F. Crow and the art of teaching and mentoring. Genetics 189:1129-33.
Luo Z-X, Yuan C-X, Meng Q-J, and Ji Q. 2011. A Jurassic eutherian mammal and divergence of marsupials and placentals. Nature 476:442 - 445.
Begun DR, and Kivell TL. 2011. Knuckle-walking in Sivapithecus? The combined effects of homology and homoplasy with possible implications for pongine dispersals. Journal of Human Evolution 60:158 - 170.
Bedny M, Pascual-Leone A, Dodell-Feder D, Fedorenko E, and Saxe R. 2011. Language processing in the occipital cortex of congenitally blind adults. Proceedings of the National Academy of Sciences [Internet] 108:4429–4434. Available from: http://dx.doi.org/10.1073/pnas.1014818108
van Woerden JT, Willems EP, van Schaik CP, and Isler K. 2011. Large brains buffer energetic effects of seasonal habitats in catarrhine primates. Evolution 66:191 - 199.
Haslam M, Roberts RG, Shipton C, Pal JN, Fenwick JL, Ditchfield P, Boivin N, Dubey AK, Gupta MC, and Petraglia M. 2011. Late Acheulean hominins at the Marine Isotope Stage 6/5e transition in north-central India. Quaternary Research [Internet]. Available from: http://dx.doi.org/10.1016/j.yqres.2011.02.001
Slimak L, Svendsen JI, Mangerud J, Plisson H, Heggen HP, Brugère A, and Pavlov PY. 2011. Late Mousterian Persistence near the Arctic Circle. Science [Internet] 332:841–845. Available from: http://dx.doi.org/10.1126/science.1203866
Peresani M, Fiore I, Gala M, Romandini M, and Tagliacozzo A. 2011. Late Neandertals and the intentional removal of feathers as evidenced from bird bone taphonomy at Fumane Cave 44 ky B.P., Italy. Proceedings of the National Academy of Sciences [Internet] 108:3888–3893. Available from: http://dx.doi.org/10.1073/pnas.1016212108
Trinkaus E. 2011. Late Pleistocene adult mortality patterns and modern human establishment. Proceedings of the National Academy of Sciences [Internet] 108:1267–1271. Available from: http://dx.doi.org/10.1073/pnas.1018700108

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.