john hawks weblog

paleoanthropology, genetics and evolution

population dynamics

  • Mailbag: Noah's Ark

    Tue, 2011-10-11 23:32 -- John Hawks

    From a reader:

    Hello Dr Hawks I am a reader of your blog and respect your expertese so I thought you would be the right person to ask this question to. I was debating a creationist about human genetic history the creationist is a literal believer in Noah's ark andi was saying to the creationst that one of the reasons we know the story of the global flood is nor true is because if it were all species including humans would have a bottleneck of two individuals dating to the exact same time. The creationist then cited this article as proof that humans could have been bottlnecked to 2 or six individuals

    "However, the global extent of ß[beta]-globin divergence has at first sight some startling demographic implications because the hunter-gatherers who migrated from Africa. Europe and Asia have rather similar haplotype frequencies. Hence, the emigrants must have undergone the major change in haplotype frequency in the interval between leaving Africa and dispersing throughout the rest of the world. Assuming--and this is little more than an informed guess--that this interval was 20,000 years, population-genetics theory tells us that the mean effective size of the ancestral population for all non-Africans throughout this period must have been 600 individuals; or alternatively ;that ;the bottleneck was 6 individuals for 200 years, or even a signle couple for 60 years. (The expected time for the loss of a neutral gene present in thepopulation at frequency p is E(T) = -4N plnp/1-p, where N is the population size. We assume a generation interval of 20 years and that the 4 common haplotypes were present at equal frequencies in the ancestral African population.) If this is the case, much of mankind was an endangered species during an imporant part of its evolution." ~ J.S. Jones and S. Rouhani, "How Small was the Bottleneck?" Nature, 319, Feb. 6, 1986, p. 450

    What is this article actually saying? Is it saying that it really is possible for every human alive today to have sprung from only 2 or 6 people? Because that contradicts everything Ive read that says genetics shows that our population could neevr have been bottlnecked below at least a few thousand individuals. Can you explain it to me. kind regards

    A single gene can never provide evidence showing such a bottleneck, it requires every gene in the genome to show a consistent pattern. In this case, the most obvious genes to examine are those with the *most* variation. For example, the human HLA genes have hundreds of allelic variants in human populations that have existed for thousands of years. Each of these genes (including HLA*A, HLA*B, HLA*C, DRB1, DRB2, DQB) has old variations, the oldest alleles have been retained from our common ancestors with chimpanzees and gorillas. These could never have been retained for so long if we had undergone a bottleneck to two or a few individuals.

    It is true that human genetic variation is low relative to some other mammals, but it is not indicative of a bottleneck to a handful of individuals. When geneticists today refer to bottlenecks, they are estimating many hundreds of individuals at the least, and 10,000 individuals as a more likely value.

  • Neolithic discontinuity in Hungary

    Thu, 2011-09-22 16:53 -- John Hawks

    Dienekes comments on a new paper finding another strange mixture of haplotypes in Neolithic-era sample of mtDNA from central Europe ("Unexpected ancient mtDNA from Neolithic Hungary").

    I don't think even a science fiction writer could have predicted the kinds of ancient DNA results we are getting from Europe. We have genetic discontinuity between Paleolithic and Neolithic, and between Neolithic and present, and, apparently, discontinuity between Neolithic cultures themselves, and wholly unexpected links to East Asia all the way to Central Europe.

    The paper is by Zsuzsanna Guba and colleagues [1]. The final phrase of the abstract:

    Our investigation is the first to study mutations form Neolithic of Hungary, resulting in an outcome of Far Eastern haplogroups in the Carpathian Basin. It is worth further investigation as a non-descendant theory, instead of a continuous population history, supporting genetic gaps between ancient and recent human populations.

    Past populations had incredible dynamism across Eurasia. Of course, as shown later, we need not maintain that the haplogroups presently common in East Asia have necessarily been there all that long.


    References

  • Orangutan dynamics of Borneo

    Wed, 2010-11-24 01:46 -- John Hawks

    Bornean and Sumatran orangutans are the most highly divergent subspecies within any of the living species of great apes. The two farther apart even than chimpanzees and bonobos, which are good biological species. The time of the Bornean-Sumatran orangutan divergence as estimated from mtDNA is around 3.5 million years ago.

    This is old enough that many primatologists consider the two populations as separate biological species. The species distinction is supported by some aspects of morphology, but as yet we have no good nuclear DNA information about the extent of divergence. In chimpanzees, nuclear genetic comparisons suggest a relatively recent founding of one subspecies and recurrent gene flow between the others, despite high mtDNA divergence between the subspecies. So information from across the genomes of Bornean and Sumatran orangutans may be necessary to substantiate the hypothesis of long isolation suggested by mtDNA.

    Within Borneo, different local populations of orangutans have strong genetic differentiation, with few shared mtDNA haplotypes among them. A new study by Natasha Arora and colleagues [1] has provided further detail about these relationships within Borneo. Based on earlier work, they expected to find high population differentiation within Borneo, and that is what they found:

    [O]ur analyses revealed high and significant mitochondrial differentiation, with populations within currently recognized subspecies generally displaying as much differentiation as those between subspecies. Of notable interest is the great extent of subdivision and lack of reciprocal monophyly for the morphologically recognized subspecies P. p. morio and P. p. wurmbii. MtDNA haplotype sharing is uncommon and for populations separated by rivers occurs only in two instances: (i) for SA and GP and (ii) for the northern and southern populations across the Kinabatangan river. In both cases, very recent common ancestry could explain the incomplete mtDNA lineage sorting. For North Kinabatangan (NK) and SK, Jalil et al. (27) proposed an expansion from a recent common refugium further west in Mount Kinabalu, as posited for other Bornean species (46, 47, 49). DV, with its low haplotype diversity, might also be the result of a recent range expansion. GP is located proximally to the Bangka–Belitung–Karimata–Schwaner divide, from where orangutans are presumed to have dispersed to the rest of Borneo (12) and where we might expect a rich haplotype diversity. However, the presence of only one mtDNA haplotype shared with populations further east suggests that the current population in GP is recent and/or underwent a severe recent bottleneck. This and other local bottlenecks make it impossible to reconstruct a colonization of Borneo through the southwestern “choke point” (52).

    They were able to confirm the relatively strong differentiation of Bornean populations by examining nuclear microsatellites. These do not give a great indication of the time period over which the populations may have developed their differentiation, but the microsatellites do document the relative lack of allele sharing between the populations, attesting a history of low gene flow in the recent past. The populations they identify as strongly differentiated do not correspond entirely with the subspecies recognized along morphological lines, but there are strongly differentiated populations here.

    The "news" aspect of the paper is the one unexpected observation: the mtDNA ancestor of Bornean orangutans lived relatively recently, only around 176,000 years ago (with a range of error stretching from 72,000 to 320,000 years ago. The data in the study do not allow us to distinguish whether this was a time when the Bornean population may have been founded, or whether instead the mtDNA lineage spread through pre-existing populations. The authors pursue the hypothesis that Bornean orangutans were limited to a refugium sometime during the early Late Pleistocene:

    Assuming that orangutans arrived in Borneo around the same time as gibbons and macaques, the recent coalescence of Bornean orangutans could be explained by a bottleneck through a severe rainforest contraction. Such a bottleneck would have had a more dramatic impact on the mtDNA structure of orangutans compared with other species as a result of their low densities and slow life histories (18) as well as habitat requirements.

    The comparison with gibbons and macaques is necessary because both have substantially deeper mtDNA coalescence times within their Bornean populations. If the forest had been substantially reduced to a small area where orangutans could survive, we might expect the other primates to reflect this event -- and they don't. Nevertheless, a grab-bag of climate change scenarios appear next:

    Geomorphological and palynological data indicate the presence of dryer, more open vegetation in southern and western Borneo during the last glaciation (2, 41), and by extrapolation also during other glaciations (but c.f. refs. 42, 43). Climate change was especially severe during an extended cold period within the penultimate glaciation between 130 and 190 ka (44, 45), which occurred approximately at the time of mean coalescence of Bornean mtDNA haplotypes. More recently, the last Toba eruption approximately 74 ka resulted in a short, albeit signi␣cant, decrease in regional temperatures, ensued by a 1,800-y cold stadial (9, 10). Our data do not provide clear signals to make conclusive statements about potential Toba effects. Nonetheless, the coldest period of the penultimate glaciation (44, 45) was more prolonged than the cold period following the last Toba eruption, suggesting more severe effects of the former on the extent of rainforest across Sundaland. In any event, suitable rainforest habitat for orangutans should have existed in certain regions in Borneo where a refugium population survived the dry glacial conditions.

    A coalescence time of 176,000 years ago does not point to a short-duration bottleneck that began 74,000 years ago. If orangutans in the Middle Pleistocene of Borneo had high genetic differentiation, a crash would have to have been very severe -- eliminating all but one small regional population -- to have effected the present distribution. Still, the great uncertainty in the actual coalescence time leaves open many possibilities, and the refugium hypothesis in the general case is worth testing, even if the Toba eruption in particular cannot explain the data.

    Given the uncertainty about the habitat structure of the now-submerged areas of Sunda, we may also want to consider the hypothesis that the present orangutans arrived recently on Borneo from mainland Southeast Asia. Even if orangutans had lived on Borneo during the Middle Pleistocene, they may not have been the current orangutans. Or even better, they may have been Neanderorangs -- an initial population that was genetically swamped by migrants arriving from elsewhere. The deep Sumatra-Borneo divergence means that the Bornean population was probably not recently derived from Sumatra, but that's a very restricted source compared to the Late Pleistocene distribution of orangutans across mainland and island East and Southeast Asia.

    Some other animals walked from Sumatra to Borneo repeatedly during the Pleistocene, including humans. In the human case, we know that a large fraction of the genetic ancestry of Bornean and Javan people was derived from Asia within the last 100,000 years -- in other words, Late Pleistocene gene flow. The movement of genes may have happened in the context of a dispersal of Asian (or ultimately, African-derived) populations into island Southeast Asia. The paper includes some discussion of other primate species:

    For instance, the south Bornean gibbon Hylobates albibarbis and the Sumatran–Malaysian gibbon Hylobates agilis have a TMRCA of 1.56 Ma (36), and Bornean and Sumatran pig-tailed macaques have one of 3 to 4 Ma (37). By contrast, the Bornean–Sumatran common ancestor of both the silvered langur(39) and clouded leopard (40) is much more recent than that of orangutans, gibbons, and pig-tailed macaques, probably because of a higher ␣exibility in habitat use.

    The pig-tailed macaque divergence time is more or less the same as the orangutan divergence; the others are more like the time range for human dispersals into island Southeast Asia. We can add to the primates a few other medium-sized mammals; for example, clouded leopards are highly differentiated between Sumatran and Bornean populations, and their mtDNA divergence occurred sometime after 3 million years ago.

    There may be no contradiction between the recent mtDNA common ancestor and the high degree of population structure in Bornean orangutans; the mtDNA could have been selected. We really would want resequencing of a lot more loci in these orangtuan populations, for which we may not have to wait too long. Mitochondrial DNA is convenient in many ways, including its greater sensitivity to restricted population size and higher mutation rate. But the intrinsic variance of a single gene system under genetic drift is so high that this disadvantage probably outweighs all advantages for reconstructing population sizes.

    At any rate, the orangutans now provide an additional case where the subspecies-level history of hominoids is more complex than depicted five or six years ago. Uncovering these kinds of dynamics highlights the need for better modeling of demography and dispersal within a geographically widespread species. Isolation-by-distance and long-lasting subspecies are well-defined models, but when they are refuted, we have a lack of well-defined alternatives.


    References

  • Migration thinking

    Fri, 2010-08-20 08:30 -- John Hawks

    Murray Cox and Michael Hammer have a short commentary piece in the current BMC Biology, titled, "A question of scale: Human migrations writ large and small" [1]. They review a few recent papers concerning human migration and intermixture -- including the Neandertal genome draft [2], the paper by Chuanxiang Li and colleagues showing Bronze Age admixture in the Tarim Basin [3], and their own work quantifying historical gene flow inside and outside Africa [4].

    It's a short review, but I thought their conclusion serves some thought -- they discuss some of the theoretical complexity of estimating ancient rates of gene flow. The simple model assumes constant rates, but human populations aren't simple.

    We expand on just one of these points for illustration (Figure 3). Even when gene flow is inferred explicitly, existing methods invariably assume that it has remained constant through time. However, it seems more reasonable that two diverging populations might share more migrants initially (due to shared geography or existing social relationships), with gene flow subsequently decreasing exponentially as the two populations move apart (Figure 3a). Or gene flow might increase exponentially as two geographically separated populations begin to move closer together (Figure 3b). Alternatively, gene flow might suddenly resume between two long separated populations; for instance, where geographically disconnected populations came back into contact, either as hunter-gatherer groups during the late Pleistocene (Figure 3d), or as human mobility increased following the development of farming in the Holocene (Figure 3c). The important point is this: two populations can look very similar (FST = 0) or very different (FST = 0.3) even when they have exchanged the same number of migrants (that is, graph lines with the same color in figure 3). It is therefore insufficient to consider only how many migrants have moved between populations; we also need to know when these movements occurred.

    I don't reproduce the figure, because it's complicated and I think the text is sufficient to establish the point. Averages aren't very meaningful. I'll point out that there is some hope of testing these hypotheses, if we consider selected genes -- which have a time that they originated.


    References

  • Mailbag: Invasive species growth phases

    Sat, 2010-08-14 11:27 -- John Hawks

    Re: "Lag times in biological invasions:

    The initial location of the invasion is not likely to be ideal for the introduced species. Eventually it spreads to an area it is better adapted to and then begins it's growth phase.

    Yes, that's one of the environmental reasons for a lag, often people provide the dispersal vector to bring it to the favorable habitat. Sometimes, people bring the habitat to the invader -- pollution abatement programs sometimes come with a blossom of colonizing species. As you'll see I'm more interested in some much longer-term phenomena, where these issues of environmental factors will also include cultural changes.

  • Lag times of biological invasions

    Fri, 2010-08-13 18:54 -- John Hawks

    A biological invasion occurs when a species rapidly colonizes a new geographical area. The new area is often very far from the regions considered to be part of the species' native range.

    Well-known examples include the invasion of the southern states of the U.S. by fire ants (originally South American), zebra mussels (originally eastern European) in the Great Lakes, the dispersal of cane toads (originally South American) in Australia, and grey squirrels (originally North American) in England. I've written about invasive species before, focusing on the example of fire ants.

    Many invasions are not instantly successful, and don't really get going until quite a long time after a species is first introduced to a new geographical area. This is called a lag. This phenomenon may seem mysterious. Some alien species seem to cling by their fingernails at low numbers for years, before suddenly exploding into invasiveness.

    Crooks and Soulé (1999) [1] examined this issue of "lag times" for invasive species. There are several reasons why such lags may occur, or be manifested in historical records. The following notes are mostly a paraphrase and summary of this book chapter, with pointers to additional and subsequent research. They delineate several reasons why biologists may detect a lag during a biological invasion.

    1. The species was actually expanding, but wasn't detected in some areas.

    The most obvious reason why a biologist might observe a lag time between introduction and the rapid growth of a population is that he wasn't looking hard enough. Or, to put it more gently, the resolution of observations is not great enough to detect a positive rate of growth at low initial numbers.

    In this consideration of the lag effect during invasions, it should be noted that many estimates of the time between initial invasion and subsequent population explosion may be conservative. This arises from yet another leg effect: Our lag in determining the presence of a new invasive species. It is likely that many invaders are present in low numbers for some time before they are first recorded. Such "early stage subdetectability" was suggested to occur for the medfly (Ceratitis capitata) in California, which may have been present for more than 50 years prior to its discovery in 1975 (Carey, 1996). Such lags in detection of exotics will be especially likely for small or cryptic species in undersampled habitats (108-109).

    This is analogous to the problem of detecting natural selection on a rare allele. It just hasn't grown enough to make it obvious that any shifts in numbers aren't merely random fluctuations.

    Needless to say, if the sampling scheme excludes large areas and provides diagnostic samples at intervals of thousands of years -- like the archaeological record -- the lag in detection of a population may be extreme.

    2. The inherent lag effect.

    This is discussed by Crooks and Soule (1999) from pages 109-114. In some sense, it is a null hypothesis for a lag. For mathematical reasons, a population's numbers follow a curvilinear pattern that may appear as a lag in observational data.

    The exponential growth of a population has a noticable inflection point. When the population is small, its numbers increase slowly. The equation representing growth at a constant intrinsic rate r is:

    N_t = N_0 e^{rt}

    As the population becomes common, its absolute numbers begin to grow very rapidly. Its growth may appear to accelerate or explode in numbers, even though it is actually growing at the same intrinsic rate as before.

    A second inherent lag involves dispersal. The most common model for dispersal of a biological invasion is a diffusion wave model, attributable to R. A. Fisher [2], and developed further by Skellam [3]. This model predicts that a dispersing population will form a "wavefront" that moves at a linear rate over time. This means that the radius of the area occupied by a dispersing population will increase linearly with time. When a population is spreading over a two-dimensional geography, the area it occupies will increase as the square of time.

    This model correponds very well to many historical cases of biological invasion. For example, fire ants:

    Fire ant initial invasion area from 1928-1949

    Fire ant dispersal in southern U.S. from ca. 1939 to 1995. Figure from Brown 1957 p. 260 [4]. Brown took the plot from Wilson (1951).

    When a population already occupies a substantial area, it becomes easy to confirm its rate of increase. But below some threshold area, this small-scale spread can be difficult to observe. Moreover, the diffusion model may break down at small population sizes. The stable wavefront really does not establish itself until a population has saturated its center of origin. Before that point, the dispersal of individuals may cover less area than predicted by the model's linear rate of increase.

    3. Environmental causes for prolonged lags.

    The inherent lag effect occurs even when a population is increasing in numbers and radius at a constant rate. But the rate of increase may vary for many reasons. It is useful to consider both the intrinsic growth rate (r) and the dispersal function (D) separately, as a change in either of these may cause an apparent lag in the pattern of a biological invasion. Crooks and Soule (1999) considered these to be "prolonged" lags, in that they may be greater than expected from the mathematics of growth and dispersal in a population with constant r and D. They first discussed cases where the dispersal or growth rates may be modified by environmental changes.

    In historical cases of biological invasions, human-induced changes in the environment have often enhanced the growth rate or dispersal of invasive populations. I like their example of cut-leaved teasel (pp. 105-106) because I pass a stand of teasel on the highway on my way into Madison:

    The cut-leaved teasel (Dipsacus laciniatus) is a weed that arrived to New York prior to 1900, and in 1913 it was reported only from Albany (Solceki 1993). However, in the last thirty years the plant, which is capable of forming monocultures that exclude most native vegetation, has spread quickly throughout much of the mid-west. This rapid spread has been attributed to dispersal via the interstate highway system, as the teasel is particularly common along highways and roads.

    Obviously, providing an interstate highway of long-distance dispersal to a species with a positive growth rate is going to accelerate an invasion.

    Likewise, human-induced habitat disturbance can make conditions favorable for colonizing species. This phenomenon encompasses situations as varied as the elimination of predators (e.g., coyote eradication allows red foxes to spread), fire abatement (helping red cedars spread into grassland), dams (reducing high water levels and thereby allowing canyon-bottom sandbar communities to spread) or trash dumping (creating mosquito habitat in water traps).

    Climate change may play a role in some invasions. Warming trends have gotten the most attention, in that they may allow some invasive species to extend their ranges further north. But greater local importance may go to shifts in aridity or rainfall.

    The final case they discussed (p. 117) is the Allee effect, a model in which a population at low density cannot find mates or utilize resources as efficiently as a denser population. As they note, this model was discussed by Lewis and Kareiva (1993) [5] as a possible cause of lag times in biological invasions. The same topic was picked up in a 2005 review by Taylor and Hastings [6]. Allee effects might qualify as an intrinsic lag, they are simply a case where the right population growth model is not constant growth, but density-dependent growth. But an environmental change may relax an Allee effect; likewise a genetic change in the invasive population may make it more capable of persisting at low density and thereby overcoming the Allee dynamics.

    4. Genetic causes for prolonged lags.

    To my mind, the most interesting cases entail actual evolution of the invading population to increase its ability to invade. Crooks and Soulé (117) provided a background to this topic, drawing heavily from the literature on colonizing species from the mid-1960's:

    The possibility of a lack of a genetic "fit" of a colonizing population to cause prolonged lags was widely speculated upon at a conference on the genetics of colonizing species (Baker and Stebbins, 1965). Fraser (1965) discussed situations where "migrants move into an environment to which they are not specifically adapted" and "will have an initial phase during which the specific adaptations will have to evolve". Lewontin (in Mayr, 1965) also discussed this issue of “break-out” colonizations, where “under continuous identical selection, there is a long period of stalling of increase in fitness followed by a rapidly rise.” Similarly Mayr (1965) suggested that the sudden spreading of the Serin Finch and Collared Dove may be caused by genetic mutation. Baker (in Mayr, 1965; Baker, 1965) commented that the “sudden explosive spread of animals after a period when nothing very much seems to be happening is paralleled by plants,” that “if a newly introduced plant does not have appropriate `general-purpose' genotypes available, it may be confined to a restricted area until these do become available through recombination or introgression.”

    In 1999, Crooks and Soulé noted that there were essentially no empirical cases where such genetic adaptation had been shown important for an invading population. It made great evolutionary sense, the problem was that genetic changes were extremely hard to demonstrate (118).

    Most mutations that are likely to contribute to fitness are subtle, quantitative changes in the phenotype, rather than qualitative, "Mendelian", phenotypic alterations. But the chances of researchers stumbling on such beneficial new mutations by random search are virtually nil.

    This situation changed markedly during the last decade. By 2002, Carol Lee [7] could compile a short review paper outlining cases of biological evolution accompanying invasion. Many invasive species have undergone Whether such changes were necessary to explain lag times was not clear.

    More obvious was the importance of genetic variation, in Darwin's sense, as a prerequisite for adaptation to occur. A new colonizing species, starting at low numbers, is likely to lack variation (118-119):

    [P]opulation genetics theory provides some insight into the interplay between population size and genetic evolution. First, because of founder effects (Mayr, 1963) [8] very small populations (less than 50 individuals or so) are unlikely to be able to evolve improvements in fitness (Franklin, 1980; Soulé, 1980).

    Calculations based on balancing total mutation rates with genetic drift suggest that until the population size increases to about one thousand, natural selection will not be a very effective force in counteracting the randomizing effects of genetic drift ... and most beneficial mutations, even if they occur, will have a low probability of being incorporated into the population (Soulé, 1980).

    Crooks and Soulé concluded that a positive feedback is likely to exist between population size and invasiveness. One way that this might affect an invading population is that new adaptive variation will appear in proportion to its expanding numbers. Hence, the invasiveness of the population may actually increase over time as its numbers increase. That would make the inflection point of explosive growth relatively steeper, compared to the case where no new adaptive variation were possible.

    A small population becomes more and more likely, as time goes by, to develop the variations that makes it invasive. This would tend to enhance the lag time effect -- a population truly hanging on at low numbers, until the critical adaptive changes happen to enable it to spread widely.

    The importance of genetic diversity to the invasiveness of exotic species has since been demonstrated clearly in several empirical cases. Maybe the most well-known was described by Kolbe and colleagues (2004) [9], who studied a species of Cuban lizards that had been introduced in Florida and throughout the Caribbean. The invasive populations were cases where recurrent introductions had brought genetic variation from Cuba or other sources into small founder populations.

    Why lags are important

    I don't need to say a lot about why invasion lag times are interesting; I'll revisit this issue later. But one aspect that resonates for biologists (120):

    Recognition of both inherent and prolonged lags suggest that the past performance of an invasive species may be a poor predictor of its future potential for numerical increase, range extension, and ecological effects. It is dangerous to assume that ecological containment (mal-adaptation) will last forever, especially if numbers of individuals pass the threshold that increase the likelihood of enhancements of local adaptation by natural selection.

    From one way of thinking, this is no more than to conclude that natural selection is stochastic, and a new adaptive trait can appear at any time. It's more likely to happen in a large population, and it's more likely to happen when the population is far from an adaptive optimum.

    But an alien species is more likely than natives to be far from its adaptive optimum, because it finds itself in a geographical setting far from where it evolved. It may be barely hanging on in this new location. But in the long run that's an ominous sign -- it's the signal that the genetic background of this alien may have a lot of potential for rapid improvement.


    References

    1. Crooks JA, and Soule ME. 1999. Lag times in population explosions of invasive species: Causes and implications. In: Sandlund OT, Schei PJ, Viken \r{A}slaug Invasive Species and Biodiversity Management. Invasive Species and Biodiversity Management. Dordrecht, Netherlands. p 103–125.
    2. Fisher RA. 1937. The Wave of Advance of Advantageous Genes. Annals of Eugenics 7:355–369.
    3. Skellam JG. 1951. Random Dispersal in Theoretical Populations. Biometrika 38:196–218.
    4. Brown WL. 1957. Centrifugal Speciation. Quarterly Review of Biology 32:247–277.
    5. Lewis M. 1993. Allee Dynamics and the Spread of Invading Organisms. Theoretical Population Biology [Internet] 43:141–158. Available from: http://dx.doi.org/10.1006/tpbi.1993.1007
    6. Taylor CM, and Hastings A. 2005. Allee effects in biological invasions. Ecology Letters [Internet] 8:895–908. Available from: http://dx.doi.org/10.1111/j.1461-0248.2005.00787.x
    7. Lee C. 2002. Evolutionary genetics of invasive species. Trends in Ecology & Evolution [Internet] 17:386–391. Available from: http://dx.doi.org/10.1016/S0169-5347(02)02554-5
    8. Mayr E. 1963. Animal Species and Evolution. Cambridge, MA.
    9. Kolbe JJ, Glor RE, Rodriguez Schettino L, Lara AC, Larson A, and Losos JB. 2004. Genetic variation increases during biological invasion by a Cuban lizard. Nature [Internet] 431:177–181. Available from: http://dx.doi.org/10.1038/nature02807
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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.