john hawks weblog

paleoanthropology, genetics and evolution

morphology

  • Palming Homo erectus

    Sun, 2013-04-14 17:22 -- John Hawks

    New Scientist reports on Carol Ward's presentation at the AAPA meetings, describing a new metacarpal of Homo erectus from West Turkana: "Stone tools helped shape human hands". It is a third metacarpal, a bone that happens to be pretty different between known australopithecines and recent Homo. But strikingly none have yet been described for Homo before the Neandertals.

    Because the fossil is younger than the first tools, Ward's team believe it is the first evidence of anatomy evolving to suit a new technology. As stone tools became more widespread, those who had the wrist structure to use them would have had an evolutionary advantage over their weaker-wristed kin. "The way we look today has been shaped by our behaviour over millions of years," says Ward.

    The developmental change represented by this anatomy is a separate center of ossification at the base of the metacarpal leading to a pointy projection called the styloid process. That's a pretty interesting shift in development, and so I'm intrigued that it came closely after the appearance of Homo erectus. Ward also reported that the bone is very long, at the top end of the variation in living people and longer than any Neandertals. Another hint of big people in the Early Pleistocene of East Africa.

  • Looking over a Neandertal's shoulder

    Sat, 2012-01-07 18:04 -- John Hawks

    A study by Di Vincenzo, Steven Churchill and Giorgio Manzi has fallen into the early drawer of the Journal of Human Evolution: "The Vindija Neanderthal scapular glenoid fossa: Comparative shape analysis suggests evo-devo changes among Neanderthals" [1]. The authors do a very nice job taking a long-studied anatomical feature and reframing its variation within a new context. Reading through its discussion, I find much to like in the way Di Vincenzo and colleagues deal with the variation of late Neandertals and integrate the concept of introgressive gene flow among Late Pleistocene populations.

    The glenoid fossa is the part of the scapula that articulates with the head of the humerus. It's the base of the "socket" in the ball-and-socket joint of the shoulder -- indeed, "glenoid" comes from the Greek word for "socket". Roughly shaped like a rounded teardrop, the glenoid is narrower in early hominins and relatively broad in recent people. Neandertals have an intermediate form compared to earlier and later humans.

    Figure 1 from Di Vincenzo et al. 2012, showing glenoid fossa of Vi-209

    Figure 1 from Di Vincenzo et al [1]. Original caption: "The scapular fragment VI-209 and its stratigraphic position (arrow) within the Mousterian layers of complex G of Vindija cave (left) according to Malez et al. (1980). On the right, the configuration of the 60 semi-landmarks used in the analysis is superimposed on the SGF profile. Sliding points are filled. The stratigraphic column is from Janković et al. (2006). Photograph by Milford H. Wolpoff."

    The main point of the study is that the Vindija glenoid specimen, Vi-209, has a more humanlike form than other Neandertals. Another conclusion based on the comparative sample is that the sample of glenoids from late Neandertals is intermediate between early Neandertals and recent people. Likewise, Upper Paleolithic and Mesolithic-era European specimens are intermediate between late Neandertals and recent people. Here's a graph with the first and second principal components of the variation; I've highlighted these groups.

    Figure 3a from Di Vincenzo et al. 2012

    Figure 2a from Di Vincenzo et al. [1]. Altered to include sample names: Krapina, "Classic" and West Asian Neandertals, Vi-209, and Upper Paleolithic/Mesolithic. X-axis is the first principal component of variation based on analysis of the whole sample, Y-axis the second principal component.

    The first principal component basically depends on the relative breadth of the glenoid fossa, with living people being much broader and Australopithecus (represented by Sterkfontein Sts 7 and Malapa MH2) being much narrower relative to the overall size of the fossa. The authors tested and rejected the hypothesis that the apparent trend could be a simple effect of size. This test was carried out relative to glenoid size, and since Australopithecus had relatively large shoulders compared to Homo, size does not vary much across the hominin sample. It would be useful to consider whether body size might matter, but body size would not by itself explain the relations of the later members of the genus Homo.

    The authors emphasize that the data are consistent with a single evolutionary trend within the genus Homo, so that the Neandertal-human difference should be interpreted within the context of this broader pattern. They propose a specific developmental hypothesis.

    Therefore, it seems reasonable that heterochronic factors related to the prolonged developmental pattern of our species (Smith et al., 2007a), which contrasts with the faster growth rates of Neanderthals and other ‘archaic’ hominins (Smith et al., 2007b; but see; Guatelli-Steinberg et al., 2005), led to longer periods of bone deposition along the inferior-lateral edge of the SGF [scapular glenoid fossa]. This could explain the observed variation along PC1 (and/or CV1) for different morphs of the genus Homo, reaching in H. sapiens the greatest extent in width of the SGF and, particularly, of its scapular portion. This is also consistent with the observation by Churchill and Trinkaus (1990) that much of the variability of the glenoid surface is a function of size variation of the joint itself, which can be viewed as forming a single functional matrix sensu Moss and Young (1960). Thus, the overall reduction in developmental rates in the genus Homo (relative to those of other hominoids) across the Pleistocene may account for the general evolutionary trend in SGF shape seen in the fossils, with more marked changes in developmental rates between archaic (including Neanderthals) and early modern humans, producing somewhat more dramatic differences between these groups in joint shape. Green et al. (2010) suggest that some of the differences between Neanderthals and modern humans in shoulder and thoracic morphology (particularly those related to clavicular length) are attributable to differences in the RUNX2/CBFA1 gene. The temporal pattern observed here would suggest that, with respect to SGF shape at least, that some differences are due to overall differences in developmental schedules (rather than specific differences in genes controlling development of the shoulder, such as RUNX2/CBFA1 or HoxC6).

    By suggesting at least one actual genetic substitution in recent humans, they lend some plausibility to the idea. I am more hesitant to accept the assumption that Neandertals had faster developmental schedules than recent people, although it could be true. This specific assumption is not necessary to support the idea of heterochronic change in the glenoid, which could be caused by much more focused developmental processes. If glenoid shape reflects heterochronic developmental changes, the data suggest that those changes were ongoing in global populations during the Holocene. Indeed, the difference between recent people in the study and Upper Paleolithic Europeans is as great as the difference between late Neandertals and Upper Paleolithic Europeans. The study's recent human sample covers a broad geographic distribution but is relatively small in numbers; a fuller comparison of recent people might uncover a more interesting pattern of change.

    The scapula has long figured in discussions of Neandertal genetic persistence. Neandertal scapulae often have a sulcus (groove) on the dorsal (back) aspect of the axillary border, and this feature is also found in a high fraction of early Upper Paleolithic skeletons [2] The axillary border morphology probably has no functional or developmental correlation with the glenoid morphology, so these features are best viewed as separate issues. I mention the axillary border only because of one significant commonality with the glenoid as considered here: We don't know how much variation in the trait may be explained by environment. Maybe the way an individual uses her arms when growing will affect the form of the scapula? With the axillary border, this question has occupied many researchers who tried to determine why some humans resemble some Neandertals and vice versa [3]. The current consensus is that a dorsal axillary sulcus probably reflects early developmental processes that are substantially influenced by genetics instead of shoulder activity pattern, but the consensus is not without detractors.

    In this study, the authors consider the role of introgressive gene flow among Pleistocene populations as a way to maintain the apparently continuous trend:

    The morphology of the SGF [scapular glenoid fossa] is unlikely to be under the genetic control of a single locus. Thus, it is more likely that regulatory genes controlling developmental rates overall produce pleiotropic effects throughout the skeleton. The introduction of these and other (non-regulatory) alleles into the Neanderthal populations of the Near East, and their movement by gene flow across Neanderthal demes into southern Europe (well in advance of the actual in-migration of modern humans) could account for mosaic morphology seen in the Vindija G3 Neanderthals, including the Vi-209 scapula. Introgression and subsequent gene flow would not be expected to have affected early Neanderthal populations (those predating the admixture), nor late Neanderthal populations from western (trans-Alpine) Europe, because they were separated by geographic barriers ( [Fabre et al., 2009] and [Degioanni et al., 2011] ), and/or protected from gene flow by distance (as hypothesized by Voisin, 2006).

    There is as yet no evidence that the Vindija Neandertal genomes have genetic introgression from the African populations from which present non-Africans derive most of their genetic heritage. Green and colleagues [4] tested explicitly for this kind of gene flow, from "modern" into Neandertal populations and found none.

    And yet, the latest Neandertals are consistently similar to recent people in ways that earlier Neandertals were not. The glenoid fossa of Vi-209 is not an isolated case, it joins many other characteristics in this sample (as noted in the quote above) and other Neandertal samples after 45,000 years ago.

    Frankly, I expect that the admixture estimates presented thus far will prove to be wrong. I could be wrong in this expectation, but there are many assumptions underlying genetic analyses of admixture, and it's easy for an incorrect assumption to give rise to an incorrect conclusion. I take the morphological evidence very seriously as a possible "reality-check" about the validity of genetic comparisons. After all, the morphological comparisons predicted introgression from Neandertals in the first place...

    Another reaction to the study by Zachary Cofran: "Evo-devo of the human shoulder?"

    Fabio Di Vincenzo and colleagues analyzed the shape of the outline of the glenoid fossa on the scapula (not to be confused with the glenoid on your skull), from Australopithecus africanus to present day humans. The glenoid fossa is essentially the socket in the ball-and-socket joint of your shoulder. The authors found that there is pretty much a single trend of glenoid shape change from Australopithecus through the evolution of the genus Homo: from the fairly narrow joint in Australopithecus africanus and A. sediba, to the relatively wide joint in recent humans. The overall size and shape of the joint influences/reflects shoulder mobility, so presumably this shape change hints that more front-to-back arm motions became more important through the course of human evolution (authors suggest throwing in humans from the Late Pleistocene onward).

    I think Cofran takes this in an interesting direction with respect to his own dissertation work on development in earlier hominins.


    References

    1. Di Vincenzo F, Churchill SE, Manzi G. The Vindija Neanderthal scapular glenoid fossa: Comparative shape analysis suggests evo-devo changes among Neanderthals. Journal of human evolution. 2011.
    2. Frayer DW. The persistence of Neandertal features in post-Neandertal Europeans. In: Bräuer G, Smith FH Continuity or Replacement? Controversies in Homo sapiens Evolution. Continuity or Replacement? Controversies in Homo sapiens Evolution. Rotterdam: Balkema; 1992. pp. 179–188.
    3. Trinkaus E. Kiik-Koba 2 and Neandertal axillary border ontogeny. Anthropological Science. 2008;116(3):231 - 236.
    4. Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, et al. A Draft Sequence of the Neandertal Genome. Science [Internet]. 2010;328:710–722. Available from: http://dx.doi.org/10.1126/science.1188021
    Synopsis: 
    A study of the glenoid fossa finds a pattern across the genus Homo, and similarities between a Vindija specimen and more recent humans
  • When anthropological and geological facts collide

    Mon, 2011-11-28 01:56 -- John Hawks

    This passage is the first paragraph of the introduction to Franz Weidenreich's monograph, The Skull of Sinanthropus pekinensis [1].

    In my earlier contributions to the study of Early Man I pointed out repeatedly the danger of confusing anthropological facts with geological facts. In determining the character of a given fossil form and its special place in the line of human evolution, only its morphological features should be made the basis of decision; neither the location of the site where it was recovered nor the geological nature of the layer in which it was imbedded [sic] are important. Discrepancies cannot be smoothed out by bringing morphological facts and opposing geological data into closer harmony with artful interpretations or by touching-up reconstructions. It is a generally accepted conception that Man has developed in the course of time by gradual transformation from an ape-like type to the type he presents today. Viewed from this fundamental standpoint, it is logical to assume that the more a form resembles the supposed ancestor the more ancient it will be, or that the more ancient it is the more "primitive" it should be.

    I am concerned with this passage today because of a re-emerging mismatch of evidence from the morphology of Middle Pleistocene humans and the genetics of Neandertals. Some paleoanthropologists have asserted that Europeans of the Middle Pleistocene were the exclusive ancestors of Neandertals. I have in the past written that Middle Pleistocene Europeans were among the ancestors of Neandertals, with sustained gene flow from other populations including Africa [2]. The Sima de los Huesos people, maybe 600,000 years old, resembled the (much) later Neandertals in several aspects of their anatomy, as did other Middle Pleistocene Europeans.

    The genetic differences between living people and the ancient Neandertal genomes appear consistent with the emergence of distinct African and Neandertal populations only within the last 400,000 years or less [3], [4].

    Such a recent date seems a poor match for the morphological evidence of Neandertal ancestry in Europe. I can think of several ways to make these morphological and genetic comparisons concordant with each other, all of which balance some shift in one body of inference against the other. As long as we can't pin down the human mutation rate within a factor of two ("What is the human mutation rate?"), there's a lot of room to make different population models consistent with the genetic data.

    This is, in today's language, Weidenreich's point. Morphological data must be interpreted in accordance with evolutionary principles, and if it doesn't fit a temporal scheme, it doesn't fit. Likewise, genetic similarities must be explained in their own evolutionary framework. These two sources of evidence must in the end be consistent with a single history. We will find that consistency not by shoehorning the evidence together, but by interpreting each with the strongest possible skepticism concerning assumptions and models.

    Weidenreich's introduction illustrates two cases. The simpler, from our point of view today, was Piltdown. Many establishment anthropologists, particularly in Britain, had maintained that Piltdown was a morphologically advanced ancestor of modern humans, which had lived early in the geological record of human evolution. Weidenreich had been an early and prominent critic of this idea, because he was convinced that the specimen simply did not fit together with its supposed geological context.

    I cannot believe, even making very liberal allowances for these uncertainties, that such incongruity between morphology and chronology as is found in the case of Piltdown can be completely brought into accord. The only hope of solution in this case would lie in assuming that the human bones were not contemporaneous with the layer in whih they were found but were deposited there later. Otherwise, modern man must be much more ancient than we ever imagined, or else Western European man did not pass through evolutionary stages as did the hymans of other regions of the earth.

    We now know, of course, that Weidenreich was entirely correct. The apparent geological facts were false, and the "advanced" characters of the specimen were simple reflections of the fact that the skull is a modern human skull.

    The other problem Weidenreich discussed in some detail was the phylogenetic position of the Steinheim skull. Like Piltdown, this specimen had been placed in a Presapiens context by other workers. Steinheim lacks most of the derived characteristics of later Neandertal specimens. Weidenreich, along with many of his contemporaries, accepted its lack of Neandertal features as evidence for affinity with modern humans. In Weidenreich's view, this similarity with modern humans was "anachronistic". Even so, the case did not challenge an evolutionary interpretation, only the assumption that features could evolve from "primitive" to "modern" along a single line. If we admit that Neandertal features were not in all cases "primitive", even if they may resemble superficially the characteristics of some apes, we can accommodate specimens like Steinheim within a population model where both moderns and Neandertals may have derived (and in some cases, secondarily derived) characters that appeared afterward.

    This scenario requires us to straighten out the analysis of the characters themselves, a process for which larger fossil samples are essential. It was to that end that Weidenreich supposed the Sinanthropus sample to be of such great utility. The subtext of the introduction was to illuminate the kinds of evolutionary problems that could be further illuminated by a full description of fossil variation. Finding variation in fossil humans did not repudiate the concept that modern humans had evolved in stages from primitive ancestors, but helps to clarify cases where the evolution has not been a simple linear progression. In many cases, features that are superficially "primitive" may actually have been secondarily derived in recent humans compared to earlier hominins.

    Along similar lines, I ran across this old post: "Dobzhansky on Weidenreich's species concept", in which Dobzhansky predicts:

    Some modern populations may carry genes that were present in the Neanderthaloids, and other moderns may not carry such genes.


    References

    Synopsis: 
    Weidenreich's introduction to the Sinanthropus cranial monograph illuminates some issues I'm facing with ancient genomes.
  • Earlobes

    Tue, 2011-10-04 02:02 -- John Hawks
    Synopsis: 
    A lab exercise illustrating the concepts of seriation and frequency, with reference to earlobe form.

    The form of the earlobes varies in humans. At one extreme, the lowest point on the earlobe is attached to the flesh of the cheek. If not, the earlobe is to varying extents "free" to dangle downward.

    Geneticists have often claimed that the earlobe form is a Mendelian trait. But more recent studies indicate that several genes are involved in the trait's variation.

    As a class, you will investigate the pattern of variation in earlobe form. The method you will use is seriation, putting individuals in a morphological order.

    Get together with your classmates and line up in order of earlobe form. It will be up to you to decide exactly how to compare each other. Your ordering of the class is called a seriation.

    Once you are in order, decide where to divide the class into attached and free earlobe forms. You can place the dividing line anywhere that makes sense to you. If you decide that no one in the class has attached earlobes, for example, that is fine.

    Your dividing line will separate the class into two categories. Delegate one student to draw a line drawing of the ear that you decided is the first of the free earlobes, closest to the dividing line. Record the number of students that you classified in both categories, attached and free.

Subscribe to morphology

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.