john hawks weblog

paleoanthropology, genetics and evolution

Flores

  • Across the waters

    Thu, 2013-03-14 00:28 -- John Hawks

    Japanese tsunami debris has been arriving on the northwest coast of the United States, carrying exotic Asian marine species along for the ride. Earth magazine takes the opportunity to tell a broader story about long-distance dispersal by rafting: "Setting sail on unknown seas: The past, present and future of species rafting". The evolution of primates included at least two major rafting dispersals, into South America and onto Madagascar:

    Perhaps the most famous example of rafting is the colonization of the island of Madagascar across 400 kilometers of open water from Africa. Madagascar appears to have been an island for at least 120 million years. Genetic studies suggest that animals began arriving about 60 million years ago. Geologic evidence for land bridges or island chains during this window has never been found, leaving rafting as the most likely explanation.

    “The rafting hypothesis has been well explored; it’s really been a process of elimination,” says Ann Yoder, an evolutionary anthropologist at the Duke Lemur Center in Durham, N.C. “It’s kind of crazy to imagine lemurs clinging to vegetation and rafting across the Mozambique Channel,” she says. “But time and time again, it really seems to be the best fit for the data.”

    It's the kind of stuff that inspired long-dead theories of sunken continents -- in this case, Lemuria.

    Many people have discussed shorter-distance rafting among present and past Mediterranean islands to explain the dispersal of Miocene primates, most notably Oreopithecus. By the time hominins show up and begin dispersing to islands (first Flores, more than a million years ago), rafting was probably deliberate.

  • Mailbag: Denisova and the hobbit

    Fri, 2012-08-31 08:42 -- John Hawks

    Re: Denisova at high coverage"

    Dear John

    I can hardly keep up with all the archaic human stuff coming out - partly as my main occupation is health genetics - but I wanted to run something past you. Given that there is reasonable agreement that Papuans and to a lesser degree Han Chinese (and peoples in between) have Denisovan ancestry, is there still any evidence that they have Neandertal ancestry? Or is the signal of presumed Neandertal ancestry just a signal of archaic ancestry which is in fact from Denisovans?

    Of course, if there is no strong evidence of Neandertal ancestry in Papuans and Chinese then it removes the need for the interbreeding to have occurred immediately out of Africa. It already seems that modern humans interbred with Neandertals and Denisovans (and perhaps with some other archaic hominin in Africa), but it seems to me that the place and time of Neandertal interbreeding could be significantly different from where first proposed?

    Then the timing of the Denisovan admixture would be of interest - I haven't read today's paper yet. Did you or anyone look in Japan and Tibet (and indeed the Andamanese) where we see relict Y chromosome lineages (and to a lesser extent relict mtDNA lineages eg M12). Perhaps they could have higher proportions of Denisovan as they have been less affected by the expansions accounting for the majority of Han ancestry? Perhaps not, but there is GWAS data available for all, so methods using this could be applied.

    Finally - getting out on a limb - I wonder if the Flores hominins were Denisovans? Can only be speculation, but has anyone commented on this.

    Thanks for your thoughts, I hope you'll spare a second to reply.

    Many thanks for your kind words. It is indeed hard to keep up, even for us!

    We are very confident that these populations do have Neandertal ancestry and that it does not all come via Denisovans. The Neandertal and Denisovan genomes each have a large number of unique alleles that allow us to differentiate these signatures. In Australians and PNG, the fraction of around 6% Denisovan is in addition to around 3% Neandertal.

    I agree, Tibet is a promising area. The paper by David Reich et al. last year did include a broad range of Chinese regional and ethnic minority populations, including Tibet, and did not find any evidence of Denisovan admixture there. This is very strange to me, and it remains to be satisfactorily explained.

    I doubt that Flores was Denisovan although it is possible. The initial habitation of Flores more than 1 million years ago was too early to have been accomplished by the same people that gave rise to Denisovans. The Denisovans diverged from Africans and Neandertals less than 600,000 and maybe as recently as 300,000 years ago. However, the initial habitation of Flores is known only from archaeology, and the hobbit itself is much more recent, only 18,000 years old. So possibly these are not a single population, in which case it is conceivable that the hobbit is Denisovan-derived.

  • Storkicide

    Tue, 2011-01-25 23:17 -- John Hawks

    I have to point to Robert Krulwich's blog post, "Killer Storks Eat Human Babies", about the giant extinct Maribou stork relatives of Flores.

    When the discovery of those stork bones was reported last month, the British tabloids went carnivore-crazy. The headline writers assumed (why not?) these birds ate people. "Giant Stork 'preyed on Flores hobbits,'" cried The Telegraph. "Stork that ate babies," said The Independent "rather than delivering them." The headlines suggested that human babies had been standard birdy breakfasts — a powerful image, for sure...

    He doesn't take the story seriously, and has Brian Switek explain the total lack of any evidence that hobbits were crushed in stork crops. Anyway, the pictures are delightful. For example:

    Hobbit stork worship

    Oh, yes. But I have a better one:

    Hobbit birth story

    I got this one from David Frayer last year, and haven't really had an occasion to use it. I suppose we can call it an origin myth.

  • Hobbit DNA hunt

    Wed, 2011-01-05 19:30 -- John Hawks

    Every so often, a reader asks me if I know any new rumors about DNA sampling of "Homo floresiensis". I'm not holding out much hope for success given the tropical location and past failure, but with new technology, who knows? In Nature News, Cheryl Jones tells us that the University of Adelaide's Centre for Ancient DNA is set to try again: "Researchers to drill for hobbit history".

    I mentioned yesterday that dental cementum is packed with calcified epithelial cells, among other things ("Tartar control and Neandertal plant use"). The presence of this organic material in calculus has led to some recent success with ancient DNA recovery:

    Most genetics research on ancient teeth has focused on the inner tooth tissue, dentine, but Adler's team found that cementum, the coating of the root, was a richer source of DNA.

    Drilling is a technique commonly used to sample teeth and bone, because it minimizes damage to the precious specimen. But Adler's team found that the heat generated at standard drill speeds of more than 1,000 revolutions per minute (RPM) destroys DNA rapidly, causing yields to be up to 30 times lower than for samples pulverized in a mill. Reducing the drill speed to 100 RPM alleviated the problem.

    I hope they have some luck, the results will surely be interesting no matter what they may be.

    Jones is an author of The Bone Readers: Science and Politics in Human Origins Research.

    (via Dienekes)

  • A foot short

    Tue, 2010-06-22 06:26 -- John Hawks

    A single foot bone from a cave isn't ordinarily very remarkable. But when it's a funny-looking foot bone from a 67,000-year-old site on an island, that gets a little more attention. New in the Journal of Human Evolution, Arnand Mijares and colleagues report on a third metatarsal from a cave called Callao Cave, on the Philippines northern island of Luzon. If the date is right, this is the oldest human bone known from the Philippines, or indeed from anywhere not reachable by land from Asia -- except for the deepest bone elements from Liang Bua cave on Flores.

    The presence of a human bone on an island not reachable without a water crossing naturally brings up parallels to the Flores case. The bone's small size provides an additional parallel. Mijares and colleagues compare the metatarsal to a sample of small-bodied Negrito skeletal remains from the Philippines, finding that its dimensions are smaller than any of them. It is smaller in its preserved dimensions than the small metatarsal of OH8, generally assigned to Homo habilis.

    Did the bone belong to a hobbit-like creature?

    Sadly, there is no direct comparison to the foot bones of LB1, the skeleton from Flores that started the Homo floresiensis craze. This would seem to be another case where the failure to disseminate scans of a specimen has impeded the analysis of new discoveries from other sites. The science suffers for it. The description of the LB1 hindlimb elements by Jungers and colleagues (2009) includes good photos of the MT3 of that specimen, which looks basically humanlike, although small and with a small proximal end in particular.

    Human metatarsals have shafts that tend to get thinner as you move from the proximal to the distal end of the bone. The thinning is both in the side-to-side (mediolateral) dimension and in the top-to-bottom (dorso-plantar) dimension. The shaft in humans is relatively straight. Ape metatarsals tend to be very curved, and uniform in thickness from proximal to distal. Monkeys are between these extremes in curvature, although with substantial variability.

    The Callao MT3 is humanlike in being relatively straight and thinning from proximal to distal, at least in a mediolateral dimension. But the bone actually gets thicker in the dorso-plantar dimension as it approaches the head. That's not like most human metatarsals. The proximal end and shaft, which are well-preserved, are smaller in this Callao MT3 than in the females of the Negrito comparative sample examined by Mijares and colleagues. The proximal end and shaft are quite a bit smaller than the OH8 third metatarsal. This is a very small bone.

    Maybe too small. The metatarsal is reported to be smaller than OH8, with an estimated length just a hair longer than the measured length of LB1 MT3.

    I'd have to look at a lot more MT3's to be sure -- which I can't do right now -- but this one looks sort of funny to me. Could it be some other kind of primate? The authors hold out some possibility that the specimen represents a subadult, but if it does, it was very close to being adult based on the preserved anatomy. So it's not a case where the bone was going to grow a lot more. As usual, I wish that the paper included more information about the range of variation in humans and other primates. If we're dealing with an odd specimen, how strange is it in the characters that stand out?

    As for dating of the site, a mean of 67,000 years ago is the result of uranium-series dating of two cervid teeth in the same stratigraphic unit as the metatarsal. This method requires the application of a model of uranium absorption over the time since the teeth were deposited. This model is too complicated to describe here; the authors go through several scenarios and conclude that despite the possibility of inaccuracies, the remains are very unlikely to have been deposited as recently as 40,000 years (the approximate age represented by occupation of Niah Cave, Borneo). I have no reason to doubt the dating.

    I'll leave open the question of whether a date above 60,000 years ago is unexpectedly ancient for the region. It's interesting, at least. I see nothing impossible about there having been non-hobbit-ish humans in the area at that time, as I think we'll need to revise much about the timing of dispersal of mtDNA lineages from Africa. And don't forget that mtDNA doesn't tell the important story anymore.

    But by and large, I want more information on this one.

    (CORRECTION: The initial version of this post followed the paper in placing the site east of Wallace's line. Wallace's line actually passes south of the Philippines.)

    References:

    Jungers, W.L., Larson, W., Harcourt-Smith, W., Morwood, M.J., Sutikna, T., Rokhus Due Awe, Djubiantono, T., 2009. Descriptions of the lower limb skeleton of Homo floresiensis. J Hum Evol 57:538-554. doi:10.1016/j.jhevol.2008.08.014

    Mijares AS, Détroit F, Piper P, Grün R, Bellwood P, Aubert M, Champion G, Cuevas N, De Leon A, Dizon E. 2010. New evidence for a 67,000-year-old human presence at Callao Cave, Luzon, Philippines. J Hum Evol (in press) doi:10.1016/j.jhevol.2010.04.008

  • Earlier arrival of stone tools on Flores

    Thu, 2010-03-18 09:56 -- John Hawks

    A new paper is pushing back the time of initial occupation of Flores by hominins to at least 1.0 million years ago. Adam Brumm and colleagues (2010) are reporting that they've found stone tools in a site from the Soa Basin of Flores, the same geological region as the previous site of Mata Menge.

    The Wolo Sege excavation yielded no faunal remains, but 45 in situ stone artefacts were recovered from the conglomerate and two fine-grained metavolcanic flakes were excavated from the lower tuffaceous siltstone layer ~15–20 cm above the Ola Kile Formation (Fig. 3e, f). A single volcanic flake was also recovered from the upper overbank deposit during extraction of sediment for dating. The Wolo Sege stone artefacts are predominantly small and morphologically undifferentiated flakes struck from cobbles by direct hard-hammer percussion (Fig. 3; see also Supplementary Fig. 2), but include a bifacially and centripetally worked ‘radial’ core, similar to those characteristic of the Mata Menge assemblage of stone artefacts.

    The radial core is not illustrated, but several of the flakes are figured in the paper. The conglomerate in question is overlain by a layer with a minimum date of 1.02 million years.

    A date of 880,000 years ago for human occupation made for a convenient explanation of faunal turnover on the island, which happened around that time. The turnover included the extinction of the small pygmy stegodont species Stegodon sondaari, which was replaced in later faunal assemblages by the Java-derived Stegodon florensis. It also included the extinction of giant tortoises.

    This suggests that the non-selective, mass death of S. sondaari and giant tortoise, associated with stratigraphic evidence for a major volcanic eruption at Tangi Talo ~0.9 Myr ago10, could represent a localized or regional extinction, and that the faunal turnover may have been a result of climate change, volcanic activity or some other natural process or event (Fig. 5).

    I discussed this with my graduate seminar yesterday. The long persistence of this toolmaking culture, in what must have been a rather small human population, is weighing on my mind. Were there recurrent contacts from Java, keeping the population going? How dependent were these people on their tools?

    Hominin predators can lead to unstable dynamics -- most predators will undergo predator-prey cycles, but humans can switch to other resources and continue to press a small prey species to extinction. The long persistence of tasty animals on Flores in the presence of hominins suggests that the subsistence practices of these hominins were different in some ways from later humans.

    This finding doesn't really help us to resolve the issues of the later Flores record, including the relationships of the skeletal individuals with other hominins. There's been some press about the hobbits lately, but it's all paleoanthropological tree-marking -- except for the news that they'll be reopening excavations at Liang Bua.

    References:

    Brumm A, Jensen GM, van den Bergh GD, Morwood MJ, Kurniawan I, Aziz F, Storey M. 2010. Hominins on Flores, Indonesia, by one million years ago. Nature (advance online) doi:10.1038/nature08844

  • From Flores to Stony Brook

    Sat, 2009-04-25 12:22 -- John Hawks

    Elizabeth Culotta reports from the Stony Brook hobbitrama:

    The meeting was a rare chance for U.S. researchers to hear from the team that discovered the hobbits, which they officially call H. floresiensis. Lead excavator Thomas Sutikna of the National Research and Development Centre for Archaeology in Jakarta and Mike Morwood, now of the University of Wollongong in Australia, flew across the globe for the meeting, which gathered only those researchers who already accept H. floresiensis as a new species.

    One piece of news: Matt Tocheri found another capitate among the bagged bone fragments:

    The bone has the same peculiar and primitive configuration seen in the capitate of the main skeleton, suggesting that at least two individuals from Liang Bua have this oddly shaped wrist bone.

    I think Culotta's short description gives a good flavor of the conference. The webcast version, which I mentioned earlier in the week hasn't shown up in the archive at Stony Brook. But two of the Richard Leakey symposia have video available (Link to archive), which might be interesting viewing.

    I started one of them, and the Stony Brook provost introduces the symposium by noting that they wanted their series of symposia to include specialists with strong differences of opinion, with the hope of making progress toward defining the critical issues.

    I guess somewhere along the way they decided to alter that strategy....

  • Flores para los muertos

    Tue, 2009-04-21 12:20 -- John Hawks

    A reader passes this along:

    [I]n case you weren't aware Stony Brook is gracing the world with a sneak peak into its Hobbit discussions. The address of their webstream is https://tlt.stonybrook.edu/webcast/Pages/default.aspx.

    They have a number of earlier meetings archived there, so I hope they will do the same with this meeting so those of us who might like to make materials available to students will be able to do so.

    UPDATE (later): Oops -- the link was broken. Fixed now.

Pages

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.