john hawks weblog

paleoanthropology, genetics and evolution

diet

  • Mmmm...geese....

    Fri, 2010-07-23 16:18 -- John Hawks

    New York is considering a plan "to eliminate 170,000 wild Canada geese":

    He said that politicians peppered officials from the Department of Agriculture with questions about the science and asked how many goose strikes had occurred and the danger they posed. They learned that there have been 78 Canada goose strikes over 10 years in New York, and that those strikes caused more than $2.2 million in aircraft damage.

    They're talking about rounding them up, gassing them, and burying the bodies. Which seems like a terrible waste.

    Deer are a much larger threat to safety than geese, and much of the country is overpopulated to the tune of millions. The meat from wild animals is much healthier, and would be especially valuable for people who otherwise are relying on highly processed fat and carbohydrate rich foods. Can't somebody find a way for Jamie Oliver to make these animals into school lunches?

  • Mailbag: Milk drinking

    Fri, 2010-07-02 09:53 -- John Hawks

    I read some older posts on your blog about dispersal of lactase persistance world wide. Is it not so that everyone can digest lactose at birth and that the production of the enzyme lactase persists as long as milk consumption persists, whether it is human, goat or cows milk? There is also the matter of pasteurization which kills beneficial bacteria that help digest the lactose. Raw milk is better tolerated than pasteurized milk by all populations wordwide, and as far as I can tell; lactose intolerance is actually an intolerance to pasteurized milk.

    Even those who drink pasteurized milk have plenty of beneficial bacteria, but bacterial digestion of lactase in the gut is problematic. The bacteria generate lactic acid and CO2, which in large quantities lead to malabsorption of other nutrients and discomfort.

    Malabsorption apparently was not a barrier to early dairying peoples; today pastoralists who rely on milk but do not have lactase persistence tend to ferment or culture the milk in ways that cut lactose content.

    The target of selection on lactase persistence was likely energy recovery. Lactose accounts for roughly 30 percent of the calories in milk, and increasing the fraction absorbed was probably highly beneficial, particularly for pregnant and lactating women. But some scientists think that the target of selection was the intestinal effect of lactose-absorbing bacteria, as diarrheal diseases exerted a high mortality risk in preindustrial peoples.

    Small amounts of milk will not hurt anyone unless they have a milk allergy, which is a separate issue. Lactase production is universal in infants, children's lactase production declines at an age that varies but is usually late childhood or adolescence.

  • The lion diet

    Wed, 2010-06-30 13:08 -- John Hawks

    National Geographic News a couple of weeks ago ran a story about lion-eating at Gran Dolina ("Prehistoric Europeans Hunted, Ate Lion?"):

    Cut marks on the lion bones allowed the team to reconstruct how the Neanderthal ancestors skinned and defleshed the lion, as well as broke its bones to remove marrow.

    That's the basic idea. The article goes on to get various archaeologists to speculate on what it means for an early human to cut up a lion. You know, were they desperate? Was the lion already dead when they found it? Did they like to eat lions? Yada yada yada. It would be more instructive to compare across the Pleistocene the number of lions with cutmarks (rare) to the number of lions that look like they were eaten by hyenas (many). This specimen is a data point, but one among many.

    The research paper by Ruth Blasco and colleagues is in the online early section of the Journal of Archaeological Science. It's a broader paper that discusses the lion remains in the context of the zooarchaeology of the site. The fauna date to MIS 9, which is around 300,000 years ago. The (one) lion is not the only carnivore -- there are brown bear, fox, and wolf bones also -- but only the lion has substantial evidence of human activity. Most of the fauna are large herbivores, with marrow-bearing elements predominantly brought in by humans and broken up. There is some evidence of carnivore activity, and the lion in particular seems to have been chewed on by a fox. Some of the cutmarks correspond to removal of viscera.

    What to make of it? The people were hungry, that's not terribly surprising. Whether they killed the lion or scavenged it is unclear. Those are the limits of Paleolithic forensics.

    I'm a bit surprised that neither the research paper nor the press article make note of the hypervitaminosis A explanation for the bone condition suffered by KNM-ER 1808. Alan Walker had claimed that the excess of vitamin A came from eating carnivore liver, and made a big story out of the hunting ability of early Homo on that basis. Later, Bruce Rothschild attributed the KNM-ER 1808 bone condition to yaws. I guess the lion-liver-eating story has died for good.

    References:

    Blasco R, Rosell J, Arsuaga JL, Bermúdez de Castro JM, Carbonell E. 2010. The hunted hunter: the capture of a lion (Panthera leo fossilis) at the Gran Dolina site, Sierra de Atapuerca, Spain. J Archaeol Sci 37:2051-2060. doi:10.1016/j.jas.2010.03.010

  • Fishy story from Koobi Fora

    Sun, 2010-06-13 08:30 -- John Hawks

    I have to credit a reader for that headline, and for forwarding the paper. It's another case of the infamous PNAS release policy. The press that came from the paper's announcement preceded the paper's availability in this case by a week. That approaches the case where a Hollywood studio won't screen a movie for reviewers before it's released. That means no reviews, which in the case of movies can only mean one thing. It's bad.

    Scientific papers fortunately don't suffer from this shortfall -- the quality of the paper seems more or less unrelated to the release policy of the journal. In this case, the press went with a story that is interesting, but not necessarily that important in the scheme of things. And I don't get to write about it until two weeks after the news stories hit the presses.

    David Braun and colleagues report on the fauna at locality FwJj20 of Koobi Fora, Kenya [1]. The archaeological remains here, including stone tools and fauna, date back to 1.95 million years. It's an interesting time because of what may have been going on with hominin anatomical evolution, but does it represent anything new in behavioral evolution?

    The authors point out that there are archaeological sites that are much older, going back to 2.6 million years. Some of those earlier localities -- notably, the earliest, Gona OGS 6 and OGS 7 localities -- have hundreds of stone artifacts combined with fauna and hominin-modified bones. FwJj20 stands out in combining a very large number of stone artifacts (2633) with a high proportion of hominin-modified bones (5.9 percent of 405 faunal specimens). Even in later deposits such as Olduvai Gorge that have a high number of localities with some stone tools, it is rare to find localities with evidence of butchery of many animals. Those are the kinds of archaeological debris that would be expected of a real focus of hominin behavior. So every additional site like this adds substantially to our knowledge of hominin behavior at the dawn of hunting and gathering.

    Here, one interesting aspect of the faunal exploitation is the small amount of surface modification consistent with bone-smashing. The authors suggest that the site had little marrow extraction than expected based on experimental replication of butchery. There is very little evidence for carnivore activity at the site, and both bones and faunal remains are clustered within a small vertical horizon of around 6 inches in thickness. The presence of small flakes and bone fragments helps to substantiate that the site did not accumulate under the influence of high-velocity water flow, and that it represents a primary activity locus for the hominins who left the tools there.

    The faunal assemblage is interesting for the relatively high proportion of aquatic animals preserved, including both turtle and crocodile bone specimens with cut marks, and some fish bones. This is the part of the paper emphasized in the press that described the site, and the paper gives a good summary of the aquatic proportion of the fauna, including the evidence that the animals were actually butchered by the hominins.

    The skeletal representation of fish bones [over-abundance of cranial fragments: 64% of fish NISP (28)] and turtle/tortoise bones [over-abundance of carapace and plastron fragments: 90% of turtle/tortoise NISP (29)] corresponds to ethnographic and archaeological distributions associated with hominin foraging. The number and taxonomic diversity of hominin-modified bones imply that hominins used the FwJj20 locality for the acquisition of meat from several different carcasses of terrestrial and aquatic animals as well as marrow from mammalian bones. This provides strong evidence of a diverse animal component in the diets of hominins before the appearance of H. ergaster/erectus (Braun et al. 2010:10004).

    But....I think that the relevance of the aquatic animals has been exaggerated. According to the MNI (minimum number of individuals) table in the paper, the turtle and crocodile bones may represent one single turtle and one crocodile. The number of fish bones is also very small -- only 15 total, and the authors do not provide an MNI for fish. Compare these small numbers to a minimum of 11 hippopotamus individuals represented by in situ bone elements, and 17 bovids. One turtle. Seventeen bovids.

    MNI is not the best indicator of dietary importance -- for mammals, it is heavily influenced by mandibles and teeth. Humans may drag mandibles back to a central place as part of the head, even if they eat the rest of the animal elsewhere. Being highly diagnostic, we can work out easily when there were lots of individuals from a mandible -- not so for broken turtle carapace pieces. But it's not very meaningful to count every crocodile bone, either. The site really does not provide any evidence that reptiles and fish simply made up a large fraction of the meat consumed there.

    From my perspective, I think that's just fine. Aquatic animals aren't important because of their sheer numbers, but because they tell us about the flexibility of foraging behavior. Living hunter-gatherers eat turtles and reptiles when they can, and because they are usually small food packages, they often eat them where they find them instead of returning to a base camp first. Hunter-gatherers are flexible in what they eat and where they eat it. FwJj20 is showing at least a substantial taxonomic flexibility in the meat-eating of early Oldowan hunters.

    Croc, turtle and fish remains also document that the Oldowan-makers were actively foraging in and around river or lake margins. That may not be earth-shaking, since we are, after all, talking about a water-dependent primate in a hot climate. But sometimes the importance of an archaeological discovery is that it strikes a "couldn't have done it" from the record.

    Still, this really isn't a case where anybody could credibly maintain that early hominins were excluded from foraging on lake or river margins. Just last year I discussed two archaeological sites that give evidence for human exploitation of aquatic resources in the Early and Middle Pleistocene. At Trinil, Java, it seems clear that people were exploiting molluscs ("The shells of Trinil"), and the somewhat later Gesher Benot Ya'aqov site in Israel has evidence of systematic fish and crab exploitation ("The fishy spaces of the Middle Pleistocene"). The possible exploitation of papyrus by A. boisei also would show a mastery of shoreline habitats by hominins. It's hard to argue that the threat of the water was lower for robust australopithecines than for Homo.

    Finding such repeated evidence of aquatic resource use, extending back near the dawn of stone tool manufacture, ought to prove one thing: The fatty acids in aquatic meat were not the cause of the expansion of brain size in Homo erectus.

    Oh, I know, the news stories all said exactly the opposite, claiming that the fatty acids were essential to brain growth, and that this shows that stone tools were important to getting this essential nutrient. Hey, Braun and colleagues started it -- they wrote it right in the last sentences of the paper:

    In addition, although animal tissues provide nutrient-rich fuel for a growing brain, aquatic resources (e.g., fish, crocodiles, turtles) are especially rich sources of the long-chain polyunsaturated fatty acids and docosahexaenoic acid that are so critical to human brain growth (2). Therefore, the incorporation of diverse animals, especially those in the lacustrine food chain, provided critical nutritional components to the diets of hominins before the appearance of H. ergaster/erectus that could have fueled the evolution of larger brains in late Pliocene hominins (Braun et al. 2010:10005).

    But "fueled" is a metaphor, not a valid evolutionary concept.

    I accept that reptile and fish meat may be nutritionally desirable. The question is whether they caused the increase in brain size associated with Homo. One way to read that hypothesis is as Lamarckism, which is simply wrong (Larry Moran has commented on that topic). I don't think that any paleoanthropologists are seriously Lamarckist, but some need to be more careful how they describe the relationship of fitness and diet.

    Let me construct a version of the hypothesis consistent with evolutionary biology. Suppose that other factors -- social competition, technological requirements -- induced selection for cognitive skills in early Homo. The response of the population to this selection may have been impeded by selection in favor of smaller brains and/or shorter life histories. That is to say, directional selection on cognition may have been impossible because of stabilizing selection on brain growth. Now diet changes might become relevant, by relaxing the stabilizing selection on brain growth. This scenario might predict an increase in the size of the brain when people began to consistently supply themselves or their children with the right nutrition.

    Understand that I don't subscribe to this hypothesis. We have much to learn about what the "right" nutrition might be.

    But the hypothesis is testable. The archaeology now suggests that significant meat consumption preceded the expansion of the brain by a half million years or more, and that fish and reptile meat made up a hunter-gatherer-like part of early hominin meat consumption from the start.

    Now it could be that later increases in diet quality -- for example, by increasing the total amount of meat, or decreasing nutritional unpredictability -- are what actually caused (or allowed directional selection on) the increase in brain size. That change would be a different hypothesis, however -- the hypothesis that selection against larger brains was relaxed by behavioral innovation. Fish fat could be a correlate of behavioral change in this hypothesiss, but it would not be the cause.


    References

    1. Braun DR, Harris JWK, Levin NE, McCoy JT, Herries AIR, Bamford MK, Bishop LC, Richmond BG, Kibunjia M. Early hominin diet included diverse terrestrial and aquatic animals 1.95 Ma in East Turkana, Kenya. Proceedings of the National Academy of Sciences of the United States of America. 2010;107(22):10002-7.
    Synopsis: 
    The Turkana Basin joins other areas providing evidence of dietary flexibility and aquatic resource use by early Homo.
  • Papyrus and A. boisei

    Fri, 2010-06-11 17:20 -- John Hawks

    I've had on my stack for quite a long time, a short paper by Nicholas van der Merwe and colleagues, assessing the stable carbon isotope ratios in several specimens from Tanzania. These include the Homo habilis specimens OH7, OH62 and OH65, and the A. boisei specimens OH5 and the Peninj mandible.

    The ratio of stable carbon-13 and carbon-12 enable an assessment of the amount of C4 versus C3 plants in the diet. I discussed the basic ideas in a longer post from 2005.

    The results on the Homo specimens are not too surprising. All three specimens overlap with South African A. africanus. OH7 and OH62 in particular have values around 20% C4, which is right near the mean observed for South African Homo and A. robustus from Swartkrans. OH65 has a higher C4 percentage than the other two, but within the range observed for Sterkfontein Member 4 A. africanus, which was significantly higher than Makapansgat or the other South African samples. So it would appear that the diet of Homo habilis did not differ from earlier hominins in terms of the ultimate origin of carbon in grasses versus non-grass plants.

    What is more surprising is the extremely high amount of C4-derived carbon in OH5 and Peninj. They score 77% and 81% C4, respectively. These are the only two specimens of A. boisei for which these stable isotopes are known, and they are very far from the observed range in the South African A. robustus.

    The authors suggest an interesting source for this high C4 proportion -- papyrus. They described a tasting tour of the wild plants of the Okavango:

    Bamford and van der Merwe investigated (and ate) the edible plants of the Okavango Delta in Botswana during the dry season (July 2003), assisted by Ezaya Karesaza, a tourist guide who grew up in this extensive wetland. Among the C3 plants that are traditionally eaten raw in this region are a variety of fruits and seeds, as well as plants of which the leaves and rhizomes are eaten. The latter include Aeschynomene fluitans, a floating legumi- nous plant, of which the leaves taste like lettuce; Typha capensis, which grows in thick stands along the water’s edge, of which the rhizomes have a pleasant taste; and Schoenoplectus corymbosus, a big water sedge, of which the stem is succulent at the bottom end. Among C4 plants, the rhizomes and culms of three other species of sedges are edible. These include Cyperus denudatus and C. dives, which grow in the grasslands of the floodplains. Unlike the grasses, they are green year-round, although not particularly prolific. The most common C4 sedge, by far, is Cyperus papyrus, which grows in dense thickets along the water edge. This species has culms as high as 4 m, of which the lowermost 0.5 m is frequently chewed by local people. It has a soft, white rind about 0.5 cm thick; the interior, about 2 to 3 cm in diameter, is more fibrous. It is chewy and pleasant tasting. The thick rhizome of papyrus is more fibrous and starchy than the culm, somewhat astringent, and requires considerable chewing effort. It produces a bolus in the mouth that has to be spat out at intervals.

    They then reported the results of a nutritional analysis of the papyrus culm and rhizome, which have roughly the nutritional and caloric value of domestic potatos, although would require a significant gut flora to deal with the cellulosic content.

    All in all, it's very curious that A. boisei is so different in these isotopic values compared to other early hominins. The theme was picked up last year in a paper by Richard Wrangham and colleagues, who focused on the idea of "fallback foods" -- the kinds of foods that an animal does not prefer, but eats when other more highly preferred foods are not available. Considering the very high C4 proportion indicated by the OH5 and Natron isotope values, it doesn't seem likely that this reflects a fallback strategy, but possibly an initial exploitation of such resources as fallbacks facilitated a later, more developed adaptation to them.

    Related posts:

    "Chemistry and early hominid diets"

    "Robust australopithecine diet ablated"

    "Average diet versus extreme diet in robust australopithecines"

    References:

    van der Merwe NJ, Masao FT, Bamford MK. 2008. Isotopic evidence for contrasting diets of early hominins Homo habilis and Australopithecus boisei of Tanzania. S Afr J Sci 104:153-155.

    Wrangham R, Cheney D, Seyfarth R, Sarmiento E. 2009. Shallow-water habitats as sources of fallback foods for hominins. Am J Phys Anthropol 140:630-642. doi:10.1002/ajpa.21122

  • UC-Berkeley genetic tests for freshmen

    Wed, 2010-05-19 15:15 -- John Hawks

    I'm not sure which tags to apply to this story. I'm torn between "colossally-bad-ideas" and "university-auditions-for-big-brother".

    Berkeley asks freshmen for DNA samples

    Instead of the usual required summer-reading book, this year’s incoming freshmen at the University of California, Berkeley, will get something quite different: a cotton swab on which they can, if they choose, send in a DNA sample.

    This is so unbelievable that I looked all over the web for news stories to confirm it isn't just a late April Fools. What conceivable educational value do they think is going to come out of this?

    The university said it would analyze the samples, from inside students’ cheeks, for three genes that help regulate the ability to metabolize alcohol, lactose and folates.

    Those genes were chosen not because they indicate serious health risks but because students with certain genetic markers may be able to lead healthier lives by drinking less, avoiding dairy products or eating more leafy green vegetables.

    WTF?!

    Hey, Berkeley! Great plan! I'm sure that your lactose intolerant students will shocked to discover that they're lactose intolerant! OMG! That explains the milkshakes! Likewise, I'm sure that the health impacts of alcohol consumption will get your 18-year-old freshmen to booze less on the weekends! And that folate metabolism test, well, that will get them used to supplements, won't it?

    I mean, seriously. Nutrigenomics is a legitimate field of investigation, but testing individuals for genes that relate to nutritional requirements has become the smelly armpit of "personalized genomics". Companies selling "personalized diet plans" or "nutritional supplements" based on supposed genetic testing have become a problem and subject of recurrent FTC investigations. There is no credible science that supports such supplements or plans, outside known nutritional deficiencies.

    In fact, there is no credible science that supports the idea that knowing your lactase persistence genotype, alcohol metabolic genotypes, or "folate" metabolic genotypes will improve health.

    This information is useless. It's a total waste of money. It gives a highly misleading picture of genetics.

    The most probable outcome is to condition 18-year-olds to accept government-sponsored genotyping. So to make it complete, the program comes with a lack of adequate privacy safeguards. The proposal has students using "bar codes" to access their data on a public website.

    Yeah, great! That's about as "anonymous" as your drink order at a coffee shop.

  • What, if anything, is Australopithecus sediba?

    Thu, 2010-04-08 22:46 -- John Hawks

    Today we finally get to learn about the exceptional discovery of four partial hominin skeletons from Malapa Cave, South Africa. Two of the fossil skeletons are described by Lee Berger and colleagues in the current issue of Science, descriptions of two more are still forthcoming.

    A kind journalist sent me a copy of the research papers a few days ago, so my graduate students and I have had a chance to think about them a little bit and compare them with other material.

    Berger and colleagues have named a new species to contain the fossils, Australopithecus sediba. For anybody who follows paleoanthropology, the new species won't be surprising -- if I found a fossil, I'd surely make up a new name for it, even if I thought it was my great-great-grandmother. In this case, the morphological reasons for naming a new species aren't trivial, but I'll begin by approaching them skeptically, especially in comparison with the large samples of South African fossils both earlier and later than Malapa. I'll conclude that a new species within Australopithecus was probably the right call, but not an easy one.

    The press is running with a "new fossils provoke debate" storyline -- are they possible ancestors of Homo or not?

    The simple answer to that question is that the Malapa skeletons are too late to be ancestors of Homo. After all, we have early Homo nearly a half-million years earlier.

    A more complicated answer is that it depends what we mean by Homo. My feeling is that these skeletons don't comport with what most of us mean when we say "Homo". Most of us have in mind an adaptive shift from Australopithecus to Homo that included larger brain size as a significant element, and the MH1 skeleton has a small endocranial volume.

    But if we accept that model of Homo, we have to accept its consequences, as the Malapa skeletons now make clear. One important consequence is that, if we assume that MH1 isn't Homo, we can no longer say have any skeletal evidence of Homo from before 1.95 million years ago. Because the Malapa specimens are more like Homo in their dental and mandibular features than are earlier specimens that have usually been called Homo.

    And if we throw out all those earlier Homo specimens...well, then suddenly Malapa isn't too old to be an ancestor of Homo after all.

    How old are they?

    The fossils lay above a flowstone with a U-series and paleomagnetic date consistent with an age just around 2 million years ago. That's a maximum age for the fossils; they must be younger than that.

    The hominins are in water-deposited sediments, which are inferred to represent ancient washes of subterranean water flows through the cave system. Two elements above the flowstone contain the hominin specimens, called facies D and E, and both have normal magnetic polarity. The most likely interpretation is that they belong to the Olduvai paleomagnetic subchron, which occurred between 1.95 and 1.78 million years ago. A specimen of the sabertooth cat Megantereon in one of these facies has a last appearance elsewhere in Africa at 1.5 million years ago. So it appears that 1.78 million years is a very likely minimum age for the fossils.

    That's about as good as dating gets in South Africa, where we're used to seeing very wide age brackets on hominin-bearing localities. It means that the Malapa hominins lived at around the same time as KNM-ER 1470 in the Turkana basin, or OH 24 at Olduvai Gorge. Until today, I think we could justly claim that the only australopithecines still known to occur in this time interval were the robust species A. boisei and A. robustus -- although the first appearance of A. robustus might (might) be later than Malapa.

    Why aren't they A. africanus?

    To me, this is the hardest question to answer.

    The Sterkfontein Member 4 sample of A. africanus is tremendously variable. The postcrania of both Malapa skeletons are tremendously informative, but fall within the range of variation at Sterkfontein for almost every feature that the authors reported. The few exceptions (such as humeral torsion and femur neck/shaft angle) are right at the edge of the Sterkfontein range.

    Malapa skeletons

    In other words, it's my impression that the postcrania of the Malapa skeletons fit within A. africanus. The limits of my impression are that there are a whole lot of observations here, and the paper generally does not report metrics for the postcrania. Maybe the sequel will give us some more surprises.

    I would have added a comparison with the Swartkrans A. robustus sample, which overlaps nearly totally in body size with Sterkfontein and contains elements that are in some cases more comparable to the Malapa skeletons. In particular, the os coxa of MH1 looks a lot like SK 3155, and the proximal femur looks like SK 82 to me, at least in the tiny picture provided with the paper. On the whole, I don't think that the Malapa hominins are particularly like A. robustus, I just think that if you put together a reasonably large sample of australopithecine postcrania, these two skeletons don't stand out.

    I'll take up the discussion of proportions of the different elements below. My feeling is that the proportions aren't exceptional for Australopithecus, either, but we have to temper that against the observation that really only AL 288-1 (Lucy) is comparable, and it's more than a million years older.

    What about the teeth? Generally speaking, the teeth of MH1 and MH2 are both at the small end of the A. africanus range. In a couple of cases (the lower canine of MH1, the lower second molar of MH2), the teeth are absolutely smaller than any Sterkfontein individual. The canines are within the range of A. robustus (remember that the robust australopithecines have small anterior teeth), but the premolars are nothing like the large, molarized Swarktrans sample of premolars.

    They're a little small but within the range of those known for Homo habilis at Olduvai Gorge. For example, OH 7 -- the type specimen of Homo habilis has molars that are 1.5 mm larger than MH1 in both dimensions.

    But then, Homo habilis really doesn't differ much in tooth size from Sterkfontein.

    In size, the Malapa teeth are exactly what you would expect for Homo erectus. The first molars are smaller than those of Dmanisi D2700/D2735, for example. But unlike H. erectus dentitions, the molars of the Malapa hominins get bigger toward the back -- M3>M2>M1.

    The Malapa mandibles are strikingly gracile. The MH1 mandible has a relatively vertical symphysis with a small cross-section. The long, parallel upper and lower corpus borders really strike me like a mandible of Homo erectus, something like KNM-ER 993 or OH 22 -- but this impression may be exaggerated considering the M3 of MH1 has yet to erupt. Metrically, the corpus breadth and height are most like OH 13. There are small australopithecine specimens that compare to this, such as AL 277-1, and it is worth remembering that MH1 is a juvenile mandible. I can't compare the ramus heights with those of other samples because the authors don't report those measurements.

    An interesting question: If these mandibles had been found in isolation, would we call them Australopithecus? The Olduvai H. habilis mandibles OH 7 and OH 13 have M3>M2>M1, while OH 16 has M2>M3>M1. The Malapa mandibles look much more like later Homo than do early Turkana basin mandibles like KNM-ER 1801, KNM-ER 1802, or KNM-ER 1482, all of which are much more robust and have larger, more molar-shaped premolars than MH1, and all of which have M3>M2>M1 except KNM-ER 1802 which lacks M3. This is a quick comparison on my part, but I think the Malapa mandibles look more like Homo than does the existing hypodigm of Homo habilis. It's hard to imagine that the mandibles in isolation would have been referred to Australopithecus. More on that below.

    Compared to the mandibles, the cranium of MH1 looks more like its counterparts from Sterkfontein. To be sure, it is an 11-13-year-old juvenile and more gracile in some respects than any of the Sterkfontein crania. But take a look at it next to Sts 71:

    MH1 next to Sts 71, frontal view

    MH1 (left) next to Sts 71 (right)

    They're not identical, naturally. Sts 71 has higher temporal lines, a slightly smaller vault, and more prominent cheeks. It also has more postorbital constriction compared to MH1, though that isn't obvious from this angle. MH1 has a true superorbital torus, Sts 71 has at best a shade of one. But you can see the similarities -- the angle of the zygomatic process of the maxilla, the narrow and concave interorbital region, the tall and narrow orbits. MH1 has no prominent anterior pillars (bony swellings on either side of the nasal aperture), but Sts 71 is not very different in this region. Sts 71 has bigger teeth.

    Consider also Sts 52:

    MH1 next to Sts 71, frontal view

    MH1 (left) next to Sts 52 (right)

    Again, Sts 52 has anterior pillars and bigger teeth, but the shape of the face is very comparable between these two. The nasal bones in particular are similar in this pair, almost "pinched" at the midline, with a lateral expansion both superiorly and inferiorly.

    We can do a similar exercise for most of the features of the MH1 cranium. What is exceptional, in the context of the Sterkfontein sample, is the overall gracility of the masticatory apparatus.

    One important thing that is not in the least bit exceptional: Its brain. An endocranial volume estimate of 420 ml (from CT reconstruction) puts MH1 at the bottom of the range of variation at Sterkfontein -- the best-known skull from Sterkfontein, Sts 5, has a volume of 485 ml, while STW 505 has a volume larger than 550 ml. Before MH1, the smallest of the South African crania were estimated to have volumes of 428 ml. This one seems to be smaller mainly by being flatter -- a shape that it shares with early Homo, but I wouldn't say it was without parallel in Australopithecus.

    But the smallest endocranial volume known for early Homo is KNM-ER 1813, at 510 ml. That specimen is extreme: the next smallest is 585.

    The vault fits in A. africanus, most of the facial features have comparable specimens in the Sterkfontein sample, with some exceptions, and the postcranial skeleton is unexceptional. The teeth are mostly within the range at Sterkfontein with some exceptions. But the mandible -- like those few facial characters -- stands out.

    Australopithecus sediba -- a new species within Australopithecus -- then seems like a fair diagnosis. The craniodental derived features are of the sort that would usually justify a new species. Heck, in the case of Kenyanthropus, even more minor differences in the face and size of teeth from contemporary A. afarensis caused Leakey and colleagues (2001) to name a new genus.

    Is MH1 really a male?

    Berger and colleagues (2010) infer that the MH1 skeleton (the one with the skull) is a male. It is large and more robust than the MH2 skeleton: Its teeth are bigger than the MH 2 skeleton, its mandible is more robust with a taller ramus, the articular ends of its limb bones are a bit larger. In addition, the greater sciatic notch on its preserved os coxa is narrower than other australopithecines like Lucy and Sts 14, and the pelvic inlet may (based on the anterior position of the auricular surface) have been smaller.

    But the skeleton isn't really very big. Its endocranial volume is small, its long bones are not nearly so robust as some australopithecines. There are large male australopithecine skeletons -- STW 431, for example -- and MH1 doesn't seem so large as these. Again, it's hard to tell without postcranial measurements, but the sex of this specimen isn't a clear call either way.

    The sex of the specimen is important to the way we interpret it, because the features that make it stand out from A. africanus concern masticatory gracility. If it's a female, it doesn't seem quite so different from A. africanus as if it's a male.

    Are they Homo?

    Let's start with the brain size, which at 420 ml seems to be the most obvious thing separating MH1 from our genus. Well, except for Liang Bua 1 -- with its endocranial volume of, um, 420 ml. Is brain size fundamental to Homo? Maybe. Maybe not.

    Alan Boyle's report on the fossils ("Fossils shake up our family tree") has an excellent letter from Don Johanson, who makes the argument that the Malapa fossils should be assigned to Homo. Of course, Johanson and Bill Kimbel in 1996 described a 2.33-million-year-old fossil from Hadar as the earliest clear maxilla of Homo. That maxilla, AL 666-1, resembles Homo in having a more vertical subnasal profile, a parabolic dental arcade, molars that are long relative to their breadth, and a "squared-off" jaw that is relatively straight across the anterior dentition. In other words, basically the dental features seen in the MH1 maxilla.

    We've got two choices. Maybe these are genuine shared derived features with these specimens and Homo -- in which case, we should probably name them Homo, as Kimbel and colleagues did for AL 666-1.

    Or, there were several australopithecines after 2.5 million years ago with these dental and maxillary (and for the Malapa hominins, we can add mandibular) characters. In which case, they're not signs of Homo at all. They may reflect parallel dental reduction in several australopithecine lineages, all of which faced niche differentiation from the emerging robust australopithecines. One of those lineages may have given rise to Homo, but we don't know which. Maybe it was South African, but it need not have been. It could even have been Asian.

    The question is just how important we think brain evolution was to the origin of our genus. If the brain was the key adaptation, then Malapa shows that the dental features are irrelevant to the brain -- because these skeletons have more dental reduction than most of the East African Homo habilis sample, but MH1 has a much smaller brain.

    What about tool manufacture?

    Part of the logic of pre-2-million-year-old Homo is the emergence of stone tool manufacture 2.6 million years ago. It stands to reason that this major shift in behavior and diet might have given rise to a new adaptive plateau for early hominins, and that would have been tied to the evolution of larger brains. The problem is that we don't have larger brains in any fossil remains until after 2 million years ago -- KNM-ER 1470 remains the earliest hominin with a brain larger than 600 ml. Up to now, people have conjectured that large-brained hominins may have existed earlier, even to the point of arguing about the brain size reflected by the otherwise-robust temporal bone from Chemeron. But it's worth pointing out that none of these pretenders to the Homo throne have smaller teeth than A. africanus. The diet shift that should have been made possible by a meat-eating stone tool economy didn't lead to smaller teeth until much later.

    And now we know that at least one small-toothed hominin also was a small-brained one.

    We don't know whether the Malapa hominins would have been toolmakers. The fact that they weren't found with tools isn't really evidence either way. Dirks and colleagues (2010) suggest that the skeletons were deposited by water washing them from an initial death trap into a secondary location. If true, it would be a miracle beyond belief for stone artifacts to have made the trip with them.

    We do know that stone tools are present in Sterkfontein Member 5 and Swartkrans Member 1, and cutmarked fauna are in the latter. Both these may be roughly contemporaneous with the Malapa hominins, depending on their date. So toolmaking hominins were in the immediate area, around the time that the Malapa hominins lived.

    SK 847 is from Member 1 of Swartkrans, and could be as old as the Malapa skeletons. Its endocranial volume isn't known, but facially it looks even more like Homo erectus than does MH1. It seems plausible that this skull represents the local toolmaking population, but even so, this skull does resemble MH1 in several respects, and again we don't know its volume. STW 53, probably a bit older than Sterkfontein Member 5, has also often been referred to Homo but it definitely doesn't have a substantially larger endocranial volume than MH1.

    So again, we seem to be faced with two choices: Broaden the definition of Homo to include this very australopithecine-like sample, or restrict it to later large-brained hominins. In either case, brain size and tool manufacture do not necessarily go together.

    What's the single most obvious thing that the paper doesn't describe?

    Which brings me to the fingertip. MH2 has a distal phalanx. The paper doesn't describe it, even though this bone element has taken on such importance in the evolution of Homo compared to Australopithecus. Big fingertips are supposed to be adaptations to force transfer through the fingertip grip used in tool manufacture.

    The picture of the thing is so tiny -- I mean, literally we're talking about two pixels of finger -- that I can't make anything out of it. Does it have a large apical tuft, like OH 7? Or is it like the Hadar distal phalanges, with narrow, apelike apical tufts?

    If one was wondering about whether the thing was Homo or not, I would think this is one of the first things you would check....

    What about those limb proportions?

    For fifteen years, a bunch of otherwise sensible paleoanthropologists have been engaged in a debate about the limb proportions of A. africanus and H. habilis. The reason why this particular question may not be sensible is because the debate is about the length of the arm relative to the leg, but there's no specimen of A. africanus that preserves both the length of the arm and the length of the leg.

    What there are: OH 62, a skeleton apparently of H. habilis that has a complete humerus and more than half the length of one femur, STW 431, which has an acetabulum and mostly complete humerus, and Sts 14, which has a partial femur, an acetabulum, and a piece of distal radius. On the basis of these fossils, we've seen some intense debate about the reconstruction of the OH 62 femur length, and a lot of discussion about whether the sizes of articular surfaces are relevant to the function of the limbs. Indirectly, it has appeared that A. africanus and H. habilis shared longer arms than were present in AL 288-1 (Lucy).

    Well, now we have two fossil skeletons with both hindlimb and forelimb elements. The paper doesn't address the issue directly, nor does it provide raw measuremnets that would lead to a quick answer. But the humerus is short relative to the size of the femur head, compared to earlier hominins, while a bit long relative to Homo by the same comparison. So it looks like the Malapa skeletons may be somewhere in between.

    The authors do argue that OH 62 is an odd skeleton in one respect: They consider the "diaphysial strength" of the humerus and femur. This is a cross-sectional measure of the area of cortical bone, and reflects the robusticity of both forelimb and hindlimb elements. In their estimation, OH 62 has a much stronger arm relative to its leg strength than the Malapa skeletons.

    It's not obvious how to interpret this observation. Is OH 62 more apelike in its locomotor pattern than Malapa? Or does the strength ratio vary allometrically with body size, and OH 62 is just at the smallest end of the comparison? Hard to tell without the length measurements.

    OK, what's the bottom line?

    Here's the important thing. From today forward, there are a bevy of features of the face, teeth and jaw that are no longer "derived characters" of Homo.

    Some people will want to fix this by broadening the definition to Homo to include the Malapa skeletons. Others will want to narrow the definition of Homo to include only large-brained specimens.

    Every specimen attributed to Homo before 2 million years ago is now up for grabs. Maybe they're Homo, or maybe their resemblances to Homo are just masticatory parallelism. We already know that parallelism explains many of the derived locomotor and masticatory resemblances of great apes, and many strongly suspect that parallelism explains the derived masticatory resemblances of robust australopithecines. If the dental reduction that once was a marker of Homo joins this list, it will hardly be surprising.

    If we follow the logic that connects tool use to dental reduction, however slowly and indirectly, then I think we have to conclude that A. sediba was likely a toolmaker and meat-eater. This hypothesis is testable, both by bone chemistry and dental morphology and wear.

    Malapa suggests the hypothesis that brain evolution followed the appearance of stone tool manufacture by a considerable delay. If so, I wonder what exactly caused the brain to expand. Did the diet shift to higher-quality foods unfold over a long time, allowing brains to expand only after 3/4 million year delay? Or was brain evolution caused mostly by non-dietary factors, such as social dynamics or climate instability?

    Or did the evolution of our genus happen somewhere else, far from the places where we currently have fossil samples? The Rift Valley and South African cave systems may have been wonderful for preserving fossils, but who's to say they weren't relative backwaters when it came to the evolution of Homo?

    Well, I'm running out of gas for this installment. More later....

    References:

    Berger LR, de Ruiter DJ, Churchill SE, Schmid P, Carlson KJ, Dirks PHGM, Kibii JM. 2010. Australopithecus sediba: A New Species of Homo-Like Australopith from South Africa. Science 328:195. doi:10.1126/science.1184944

    Dirks PHGM, Kibii JM, Kuhn BF, Steininger C, Churchill SE, Kramers JD, Pickering R, Farber DL, Mériaux A-S, Herries AIR, King GCP, Berger LR. 2010. Geological Setting and Age of Australopithecus sediba from Southern Africa. Science 328:205. doi:10.1126/science.1184950

    Synopsis: 
    New skeletons from Malapa, South Africa, present surprising evidence about the evolution of our genus.
  • Mailbag: Food nostalgia

    Sat, 2010-03-13 15:52 -- John Hawks

    Re: "The simple foods":

    Thanks for the pointer to this irritating James McWilliams piece. I hate it when huge amounts of rhetoric blow up around a piece that is so logically flawed, so this is short.

    Mr. McWilliams fails to distinguish between romanticizing the past and choosing not to poison oneself. He is actually suggesting that people in 1870 would have been stupid to object to sawdust in their food.

    Yeah, like that fool Upton Sinclair, just pining away for a more innocent age.

    Tags: 
  • The simple foods

    Fri, 2010-03-12 07:30 -- John Hawks

    James McWilliams comments on the simple, local foods movement: "The Persistence of the Primitive Food Movement". His theme, with several interesting historical examples, is that Americans have always looked nostalgically on a simpler, rustic diet.

    But did people living in the 1860s really see themselves as eating a simple diet? Not so much. This was an era of frequent food adulteration, with consumer goods being leavened by sawdust, engine grease, plaster of Paris, pipe clay and God knows what else. Responding to the increasing complexity of food in 1870, John Cowan, author of What to Eat; And How to Cook It, lambasted Americans for eating “conglomerate mixtures”—ingredients “mixed in all shapes, in all measures, and under all conditions.” He insisted that these overly processed foods not only led to “a clogged brain” but also a “sickly and unenjoyable life.”

    McWilliams seems to intend his essay as an argument against Michael Pollan and other local food-ists. I don't agree; it seems to me (and many commenters on that essay) that observing the recurrent ideological basis of American diet doesn't detract from the basic economic and health arguments for small foods. In some ways, the American diet has always been pulled by opposing trends. In one direction, industrialization and mass production. In the other, tradition and the craft of cookery. The uniquely American character is the integration of dozens of regional and international traditions into a mass market culture.

    It's a pleasure here in Madison to go to the market and rely on local produce, meats and cheeses. And beers. It's an appreciation of the craft that goes into their production.

  • Mailbag: Hidden lactase persistence alleles?

    Sat, 2010-02-20 12:15 -- John Hawks

    I just noticed this new article that I thought you might be interested in, suggesting that lactase persistence known genetics can't currently wholly explain the trait in large regions around Africa and Europe:

    http://www.biomedcentral.com/1471-2148/10/36/abstract

    Thanks. I've been studying that one for a couple of days. It looks like pretty suggestive evidence that there should be some as-yet-undiscovered lactase persistence allele in West Africa, or maybe a gene conversion from one of the already-known African mutations.

    See also Razib on this paper:

    http://scienceblogs.com/gnxp/2010/02/what_genes_cant_tell_us_about.php

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.