john hawks weblog

paleoanthropology, genetics and evolution

How mad scientists are made

Sat, 2013-03-16 19:32 -- John Hawks

Talking to my clones today during their St. Patrick's Day preparations:

Me: (skeptical) So you've filled your leprechaun trap with lots of food?

Lucy: Yeah, there's lots to eat in there.

Sadie: We don't want him to escape, but we can't really hold him in there, so we want him to decide to stay all night.

Lucy: Yes, he won't want to leave.

Me: So won't he need a potty?

Both: OOOOOH! WHAT A GREAT IDEA!

Sadie: I'm going to make an outhouse so he will go outside and then come back in to eat more!

Lucy: Mine is going to be an INSIDE toilet.

Sadie: Hey, we could collect his DNA!

Both: *laughing*

Sadie: Thanks, Daddy, you have the greatest ideas!

Lucy: Yes, you're brilliant, Daddy!

Sadie: (walks away with evil laugh) We're going to get leprechaun DNA!

My review of "Paleofantasy"

Thu, 2013-03-14 16:22 -- John Hawks

I have a review of Marlene Zuk's new book, Paleofantasy, in this week's Nature: "Evolutionary biology: Twisting the tale of human evolution" [1].

I can't replicate my review here, but for people who have access to Nature I thought I'd bring attention to it. And if you don't have access, I wanted to share a couple of my reactions.

It was a fun book for me to read. Zuk brings a light-hearted skepticism to a broad array of topics in human evolution. She took as her focus a collection of "paleo-advice" ideas: barefoot running, paleo diet, back-to-nature parenting advice. She then added some uncritically-accepted scientific notions about our evolution, such as the idea that agriculture was "the worst invention ever devised". To each of these topics, she brings an array of recent science questioning or disproving the assumptions. The result is not to debunk ideas, but to give a fuller (and more nuanced) perspective on how much we know (and don't know) about our evolution.

The serious issue underlying all these topics, which Zuk recognizes, is the difficulty of reconstructing Pleistocene environments. Some hypotheses assume a fairly detailed model of ancient environments -- the so-called "environment of evolutionary adaptedness". But ancient humans lived in an array of environments, more different than each other in many ways than different parts of today's globalized world. We are unquestionably living in environments no ancient humans knew, in population size, density, disease, lifespan, and many other ways. But in other ways, our difference from some ancient people is trivial compared to their diversity. Are we well-adapted to live in cities? Perhaps not in some ways, but maybe in others.

Probably the best part of my review to share is the end:

As an anthropologist, I observe that Zuk's use of the term 'fantasy' is just an emphatic way of describing the hypothesis-forming that is essential to evolutionary science. We play with hypotheses, explore their predictions and try very hard to falsify them. So it is, in a way, unremarkable that so many hypotheses proposed by anthropologists about ancient environments now seem to be wrong — and, in a few cases, even ridiculous.

It means that science is working. Genomics, high-resolution climate records, and microscopic and isotopic evidence have changed our understanding of what the past has to offer. With that in mind, let the next round of palaeofantasies begin.

Zuk's "very brief" overview of human evolution is a lot shorter than in other recent books on the topic. I found this to be a merciful change -- how many times do I really need to read about the Australopithecus-to-humans timeline? Readers who don't already know the basic timeline are unlikely to pick up the book, I would guess. Still, if you're looking for a "latest news" about early humans, this book is not directed that way. Where it excels is its coverage of recent evolutionary changes and the shifts in Holocene environments and genetics.

The book is not without its weak points. Without quite enough of the "paleo-advice" topics to carry the whole story, there were some real differences in tone across the chapters, with some a bit drier than others.

People coming to this book for "the right answer" about ancient environments are not going to find it. There is no right answer, at least not a scientific one, for many of the topics covered here. Zuk has done well to talk to a range of scientists, covering these different aspects of our evolutionary history, and discuss the reasons for their disagreement.

I wish scientists would do that for themselves more often!


References

Tribulations of online course approvals

Thu, 2013-03-14 12:44 -- John Hawks

John Thelin writes in Inside Higher Ed about the process of developing online courses: "Professors and Online Learning".

The official approval process was markedly different from the course preparation experience. It combined the slow pace of regular course proposal with added delays in deliberations because it was a Distance Learning course, especially at the higher levels of universitywide review. Approval and encouragement came promptly from my department and our college curriculum committee and from my dean – all of whom had an interest in having our college venture into online courses – and who understood that time was of the essence if an online course were to be available soon to students. However, at the next levels, the Senate committee reviews involved little in the way of acquiring skills or rethinking teaching design or course substance. It was characterized by objections or clarifications about relatively small details and was marked by long periods of waiting for word of approval to go on to the next step.

After subcommittee review, the most surprising finding was that in the Senate Council, and the full Faculty Senate, there were obstructionist colleagues.

There are some really useful ideas in this essay, which is mostly optimistic about the role of online learning in the future of college education. An essential point that must be made more widely known is that effective online courses are not cheap to produce. It is much, much cheaper to pay a faculty member to walk into a seminar room and conduct a discussion than it is to pay the same faculty member to produce watchable online content, design and monitor online forums that allow effective student interaction, and receive the supplemental training necessary to make everything consistent with university policies on accessibility.

Can the outcome justify the expense? Not in every case, and universities should think about how they contribute to a broader landscape of online curricular materials. They also need to think about what materials can be effectively reused by other instructors besides the one who designs them. These aspects require much more thought than the typical decisions about course readings and resources for classroom-based courses. In fact, the major use of many online resources will be to supplement classroom experiences in other universities.

Across the waters

Thu, 2013-03-14 00:28 -- John Hawks

Japanese tsunami debris has been arriving on the northwest coast of the United States, carrying exotic Asian marine species along for the ride. Earth magazine takes the opportunity to tell a broader story about long-distance dispersal by rafting: "Setting sail on unknown seas: The past, present and future of species rafting". The evolution of primates included at least two major rafting dispersals, into South America and onto Madagascar:

Perhaps the most famous example of rafting is the colonization of the island of Madagascar across 400 kilometers of open water from Africa. Madagascar appears to have been an island for at least 120 million years. Genetic studies suggest that animals began arriving about 60 million years ago. Geologic evidence for land bridges or island chains during this window has never been found, leaving rafting as the most likely explanation.

“The rafting hypothesis has been well explored; it’s really been a process of elimination,” says Ann Yoder, an evolutionary anthropologist at the Duke Lemur Center in Durham, N.C. “It’s kind of crazy to imagine lemurs clinging to vegetation and rafting across the Mozambique Channel,” she says. “But time and time again, it really seems to be the best fit for the data.”

It's the kind of stuff that inspired long-dead theories of sunken continents -- in this case, Lemuria.

Many people have discussed shorter-distance rafting among present and past Mediterranean islands to explain the dispersal of Miocene primates, most notably Oreopithecus. By the time hominins show up and begin dispersing to islands (first Flores, more than a million years ago), rafting was probably deliberate.

Covering cracks or falling through them

Wed, 2013-03-13 22:29 -- John Hawks

A beautiful bit of medical anthropology by med student Shara Yurkiewicz: "'Good patients' cover their emotional cracks"

My father sees a famous cardiologist, and he rarely asks questions. For the past three years I have criticized him for this. ”What’s the point of having a good doctor if you’re afraid to ask about how he’s treating you?” I would chide him after every appointment. He didn’t want to frustrate the doctor and compromise his care.

In response, I uttered every cliche in the book. First, I denied that this would happen. (“I’m sure he’s seen much worse.”) Then I conceded that if it did, he could just find a new doctor. (“Forget how famous he is.”) I ended with my usual tough love: “It’s your life. You’re the one who’s living with the illness, not him.” A half dozen of these conversations later, my dad is thankfully healthy but neither I nor he can explain exactly how his care is being managed.

A lot of emotion and perspectives through the eyes of other med students and patients in the essay.

Close contact skin microbiome smashup

Wed, 2013-03-13 22:10 -- John Hawks

Roller derby scientist Kate Clancy reviews a paper about skin microbiome migration among roller derby teams during matches: "Roller Derby Teammates Give Each Other Bacterial Hugs".

The authors found that team membership predicted individuals’ skin microbial communities. They also found a significant difference in the composition of each team’s microbial communities, but also that their microbial communities of each individual within a team became more similar, after bouts.

...

There are a lot of reasons each of these roller derby teams have microbial community similarities. They are from the same geographic region, they probably practice and live in the same area, some skaters may even live together. There is a high amount of skin contact when they practice, scrimmage and bout together. And, as the authors also point out, exercise produces changes in microbial communities, and these are all pretty highly ranked teams, with elite athletes.

The paper is in the new open access journal PeerJ: "Significant changes in the skin microbiome mediated by the sport of roller derby" [1]. There has been quite a lot of work previously on the transmission of pathogenic bacteria (like MRSA) in athletes, but I was surprised at how little there has been using the more ecological community approach that is now possible. In particular, I really expected there would have been a lot of similar work on wrestlers. But not yet, apparently. Go derby!


References

California's online imposition

Tue, 2013-03-12 23:11 -- John Hawks

This is big education news, from the California legislature: "Measure Seeks Campus Credit For Web Study".

If it passes, as seems likely, it would be the first time that state legislators have instructed public universities to grant credit for courses that were not their own — including those taught by a private vendor, not by a college or university.

“We want to be the first state in the nation to make this promise: No college student in California will be denied the right to move through their education because they couldn’t get a seat in the course they needed,” said Darrell Steinberg, the president pro tem of the Senate, who will introduce the bill. “That’s the motivation for this.”

So instead of increasing funding to existing campuses at sufficient levels to train the students who are seeking education, California will mandate that online courses from other institutions be accepted as part of the degree requirements at its state universities and community colleges.

Does that mean I'll soon have Berkeley anthropology students taking my online course for degree credit? We'll see....

Cultural Anthropology, open access

Tue, 2013-03-12 08:05 -- John Hawks

From Brad Weiss: "Cultural Anthropology will go Open Access in 2014".

The Society for Cultural Anthropology (a section of the American Anthropological Association) is excited to announce a groundbreaking publishing initiative. With the support of the AAA, the influential journal of the SCA, Cultural Anthropology, will become available open access, freely available to everyone in the world. Starting with the first issue of 2014, CA will provide world-wide, instant, free (to the user), and permanent access to all of our content (as well as ten years of our back catalog). This is a boon to our authors, whose work we can guarantee the widest possible readership —and to a new generation of readers inside of anthropology and out.

This is a good idea, and not an easy change for the Society to manage. In anthropology in particular open access is a valuable goal, because it can ensure that informants (and their families) can read the research that they help to create.

Heart disease among the ancients

Tue, 2013-03-12 00:39 -- John Hawks

Nicholas Bakalar covers a new paper in Lancet showing a high incidence of atherosclerosis in mummies from four ancient populations: "CT Scans Find Vascular Disease in Ancient Mummies".

Diet and climate varied among these four groups. The Egyptians may have eaten a diet high in saturated fat. The Peruvians farmed corn, potatoes and beans, and they kept domestic animals. Ancestral Pueblans grew corn and hunted rabbits, deer and sheep, while the Aleutian Islanders subsisted on a diet of fish, shellfish, seals, sea otters and whale.

“Patients with vascular disease feel guilty for having it, but you shouldn’t feel guilty,” Dr. Thomas said. “It’s part of the aging process. If people had it 4,000 years ago and in four different cultures, why wouldn’t we get it now?”

The headlines around the web are saying that this study shows that a paleo diet did not protect ancient people from heart disease. Well, yeah. There's no diet that prevents heart disease. We know that pretty well by now. What I wonder is to what extent pathogens or parasites may have influenced heart disease rates in these ancient populations.

"I am so happy that my genome didn’t come back all normal"

Mon, 2013-03-11 13:06 -- John Hawks

Ed Yong has followed the touching story of the Grossman family, whose daughter Lilly has suffered throughout her life from a serious and unknown disorder: "“We Gained Hope.” The Story of Lilly Grossman’s Genome". Recent developments in whole-genome sequencing have allowed geneticists to find the underlying genetic causes for her problems, which has led to the first hope of treatment for her.

“Every birthday was a hard one—missed milestones and another reminder that we still didn’t know what’s wrong with her,” says Gay. When would the sand eventually run out? This year? The next one? “When you don’t know what you’re dealing with, and you’re up all night with your kid crying and shaking like crazy, you think: Does anyone even remember this is going on? Nobody knew what to do with us.”

Lilly's story will not be typical, but Yong's account gives great insight into both the promise and lack of clear outcomes that will often result from genetic testing. When your particular problem is nearly unique, it will help a lot just to know what the causes are. But that doesn't mean an effective treatment will be available, and developing effective treatments for very small patient populations will remain financially difficult.

The story is beautifully written and I recommend it for students.

Binge learning

Sun, 2013-03-10 22:22 -- John Hawks

From Eli Dourado at The Ümlaut: "‘Binge Learning’ is Online Education’s Killer App".

Binge viewing is so common that it is now beginning to affect the production of television shows. Increasingly, shows are made for bingeing. They have more intricate plots and recapitulate fewer past plot points. Viewers give the shows their undivided attention, and writers and producers respond with better TV.

I thought of these facts this past weekend when I tried an online course for the first time. Because I wanted to brush up on my programming skills, I signed up for a Udacity computer science class on Friday. I was drawn in by the fact that there were no deadlines—I could put the class off if I got too busy for it. This concern was somewhat unwarranted, as I had finished half the class by Sunday evening. I realized that I had binged—on a class.

The concept of "binge learning" seems a useful addition to the conversation about online learning. One issue about MOOCs pointed out by several commentators has been that an "open course" and "open materials" are different issues, that have different strengths. Having materials totally open means that a student is free to race through them as fast (or take as long) as desired. Open materials allow binge learning.

An "open course" means that anyone can enroll in it. But the materials may be timed so that they are available only at particular times, and they may be restricted in access only to enrolled or registered students. Many students in an open course may find themselves unable to keep up with the pace of instruction. Others may be willing to work much faster, but the organization of the course may restrain them from binging on the material. It's the comparison of watching a television series broadcast week by week, instead of watching an entire season over the weekend on Netflix.

Was the first dog from the Altaian Upper Paleolithic?

Sat, 2013-03-09 22:33 -- John Hawks

A new paper by Anna Druzhkova and colleagues examines the ancient mtDNA sequence of a putative 33,000-year-old dog from Razboinichya Cave in the Altai region: "Ancient DNA Analysis Affirms the Canid from Altai as a Primitive Dog" [1]. The paper's analysis is a simple application of phylogeography, showing that the mtDNA of the Altai dog fits in a clade with a number of pre-Columbian New World dogs:

The domestication of dogs from the grey wolf is well accepted [1]. However, the timing, location and number of domestication events is still actively debated [2]–[5]. The archaeological record provides unequivocal dog remains beginning about 14,000 calendar years (cy) ago [6]–[7] requiring a domestication that predates agriculture. Putative dog remains ranging in age from 31,000 to 36,000 cy [2] [8]–[9] have been questioned as potentially representing aborted attempts at domestication, or morphologically unique wolves [4]. A full mitochondrial genome analysis of modern dogs suggests an origin in southern China around 16,000 years ago [10], whereas an extensive nuclear genome-wide SNP analysis supports a Middle East and European origin [11], which is more in accordance with archaeological data. Here we isolated, sequenced and analysed 413 nucleotides of the mitochondrial DNA control region from a putative dog specimen dated as approx. 33,000 cy from the Altai Mountains in central Asia. Only a single specimen - namely the Goyet dog (36,000 cy [2]) predates the Altai dog and hence it is thus far the second oldest known specimen assigned morphologically to the domestic dog [8].

The evidence of dog domestication has developed piecewise over the last several years. A number of Upper Paleolithic skeletal specimens have morphological dimensions inconsistent with wolves, but comparisons of the genetics of recent dogs has tended to argue against such early domestication.

In the current paper, the mtDNA similarity of the Razboinichya canid and pre-Columbian American dogs is pretty persuasive evidence that this specimen came from an early population ancestral to the dogs of northeast Asia, which would later enter the New World. This paleontological specimen shows that the mtDNA phylogeny of modern-day dogs does go way back into the Late Pleistocene, which argues against a single recent domestication. Still, the mtDNA is not the strongest possible source of evidence, since present-day dogs can be found across many of the clades that include mtDNA from wild wolf populations.

Curiously, Druzhkova and colleagues did not include the Goyet canids in their mtDNA comparisons. An analysis of 57-bp of the mtDNA of these dogs was carried out by Germonpré and colleagues [2], showing that the Belgian Upper Paleolithic dogs have a diverse range of mtDNA haplotypes, across several clades of the wolf genealogy. The current paper bases its mtDNA cladogram on 400-bp sequences, so they aren't strictly comparable, but it is nevertheless interesting that the other putative early dogs are not part of this clade including pre-Columbian dogs and the Altai specimen.

The earlier description of the Razboinichya canid by Ovodov and colleagues [3] suggested that the specimen was part of an early domestication event that was "arrested" by the Last Glacial Maximum.

We suggest that the pre-LGM Goyet and Razboinichya canids are unlikely to be the ancestors of post-LGM dogs. These canids most probably are both “proto” or incipient dogs that did not persist long enough to found enduring lineages, since no putative dog remains have been found at adjacent sites in western and central Europe and in Siberia occupied during the LGM. The ecological changes caused by progressive cooling almost certainly caused social and settlement pattern changes severe enough to have disrupted the domestication process and prevented the evolution of fully domesticated dogs.

Such a scenario would reconcile the early skeletal evidence for dogs with the conclusion that recent dogs come from a small mtDNA population.

But I think it's too soon to conclude that today's dogs don't have deeper Pleistocene roots. As zooarchaeologists have been finding more and more possible evidence of dogs, they may be filling in the record (for example, with apparent dogs from the Gravettian Předmostí site [4] and from the later Upper Paleolithic of Kesslerloch, Switzerland [5]). I wonder whether a good actualistic study of dog deaths and remains in small-scale human societies would give rise to clearer expectations about how many dog skeletal specimens we should expect from Upper Paleolithic contexts.


References

Birth politics

Sat, 2013-03-09 18:51 -- John Hawks

Alice Roberts writes about the process of childbirth as she awaits her second delivery: "Childbirth: why I take the scientific approach to having a baby". The essay includes a bit of evolutionary perspective and a good discussion of evidence-based medicine and the ways that advocacy can distort it. A teaser:

Another problem is the politics of birth. It can be quite hard for mums-to-be to access impartial evidence and advice when it seems there are plenty of people wanting to influence your decision in one way or the other. Evangelical advocates of home birth often talk about the importance of women's choice and empowerment, as well as instilling distrust in obstetricians. For me, being empowered to make a decision requires access to good evidence and the freedom to make up my own mind. And whilst "maternal satisfaction" is often put forward as an important factor to be taken into consideration, I want to know what the relative risks are. And if there's not yet enough evidence to assess that – I want to know that too.

For more detailed reading about the role of evolution in female health, I can recommend Wenda Trevathan's book, Ancient Bodies, Modern Lives: How Evolution Has Shaped Women's Health.

Quote: Morgan and Reynolds on ethics of plagiarism

Fri, 2013-03-08 20:18 -- John Hawks

Peter Morgan and Glenn Reynolds, from their book The Appearance of Impropriety: How the Ethics Wars Have Undermined American Government, Business, and Society (available online "Chapter Five: A Plague of Originality").

In fact, appearance ethics not only fail to foster better behavior in those they govern, they also undermine the behavior of those who apply them. One of the chief appeals of appearance ethics to its enforcers (who include the corps of press and commentators) is that – much like reprinting press releases as news – judging appearances requires little knowledge of substance, allowing one to discuss the issues without the need for bothersome research or thought. Classical thinkers on ethical matters had a term for this tendency to avoid hard work. It was called laziness, and it was not considered a virtue. Another appeal of appearance ethics is that it provides something to talk about: when appearance ethics are the rule, even an unsubstantiated accusation can be said to create a bad appearance. Thus, even an unsubstantiated accusation provides grist for the mill of news flashes, op-eds, and talking-head shows.

The classical term for this sort of behavior was malicious gossip and it, too, was not considered a virtue. This powerful appetite for accusations based on appearances itself encourages bad behavior: when the prevailing attitude is "where there’s smoke there’s fire" we should not be surprised to find a brisk trade in smudge-pots. This was known as temptation.

That all of these human characteristics exist should come as no surprise. That they exist, by design, in an area dedicated to the improvement of ethics would have surprised classical thinkers. We should be concerned that it goes unremarked today.

Seems apposite to recent discussions about ethics in anthropology. Self-proclaimed ethics defenders rely upon a widespread willingness to judge appearances, rather than do the hard work of engaging with evidence.

The cost of plagiarism at NSF

Fri, 2013-03-08 20:04 -- John Hawks

I pass this along from ScienceInsider, really too irritated for clever comment: "NSF Audit of Successful Proposals Finds Numerous Cases of Alleged Plagiarism".

The National Science Foundation (NSF) is investigating nearly 100 cases of suspected plagiarism drawn from a single year's worth of proposals funded by the agency.

The cases grow out of an internal examination by NSF's Office of Inspector General (IG) of every proposal that NSF funded in fiscal year 2011. James Kroll, head of administrative investigations within the IG's office, tells ScienceInsider that applying plagiarism software to NSF's entire portfolio of some 8000 awards made that year resulted in a "hit rate" of 1% to 1.5%. "My group is now swamped," he says about his staff of six investigators.

So...

Between 1 and 1.5% of the NSF budget is going to fund obvious plagiarists. Obvious because they can be caught with standard plagiarism filters, which are not richly seeded with scientific papers.

Because closed access stands in the way of incorporating much of the scientific literature into such databases.

And this doesn't count the incidence of grants that are given to applications proposing work that is already done.

The NSF budget is not evenly distributed among grants, and I suppose that many small grants probably contain more plagiarism than the few really big ones. Still, we're talking about $50 million or so.

UPDATE (2013-03-09): A reader writes:

I was just reading your post on plagiarism, and it made me recall something that happened to me years ago when I was a practicing biochemist. My boss received a grant to review on some work proposed by one of our competitors. He passed off a copy to me to look at (I was a postdoc at the time.) On reading the background section, there was a paragraph that sounded familiar. I did a little looking around on my computer and it turned out the reason the paragraph sounded familiar was that I had written it. But not in a paper - it was in one of our grant proposals. The material didn't concern any proposed experiments - it was just part of a short review of the state of the field, so we never did anything about it. I knew the guy who did this and he was quite capable of writing a decent paragraph himself, so I never could figure out why he borrowed my material. Anyway, it may not be enough to get all the literature in the database - they should have all the other grant proposals in there too.

This is another essential area. Probably the most common outcome is people stealing ideas from other proposals. The texts of unfunded proposals are not available to the public, which may cut down on stealing but also impedes comparing funded proposals. I tend to think that the lower the success rate, the more likely we'll see substantial cheating of one kind or another.

If we can describe a poster as beautiful, it is because it communicates effectively

Fri, 2013-03-08 08:06 -- John Hawks

Zen Faulkes, on why beautiful, well-made scientific poster presentations are not just an exercise in catching attention for oneself: "More than marketing".

I also had a little l’esprit de l’escalier on what a well-designed poster says about its creator. It shows that you understand what is important. A poster almost always demands you leave stuff out, which means you have to make decisions about what to include, exclude, and emphasize. Thus, you can only arrive at a beautiful, well-made poster if you have a deep understanding of the research you are presenting on it.

A well-made poster shows mastery of the material, not just tricks to grab attention.

It's that time of year again, when people are designing poster presentations for the AAPA meetings. If you haven't before, check out Zen's "Better Posters" site.

Behavior of the first North African humans

Thu, 2013-03-07 23:49 -- John Hawks

Mohamed Sahnouni and colleagues describe the archaeology of El-Kherba, Algeria. [1]. This locality is a paleontological exposure associated with the nearby Ain Hanech site, and Sahnouni and colleagues have excavated an Oldowan archaeological assemblage with large mammals such as hippos, rhinos and horses.

Dated to 1.78 Ma, the El-Kherba cut marks and usewear traces represent the earliest North African evidence showing a clear causal link between Oldowan stone technology and processing of large animal carcasses for meat, broadening the geographic range of Plio-Pleistocene hominin subsistence activities to include the Mediterranean fringe. As was shown in the East African Plio-Pleistocene archaeofaunas, early hominins were foraging for large mammals in northern Africa by circa 1.8 Ma. The evidence from the modified bones at these sites indicates that early hominins were involved in evisceration, disarticulating and removing meat, and breaking bones of large mammals to extract marrow.

It's a great site because it is the first to document human activity in North Africa. Australopithecines were present in Chad by 3.4 million years ago, and given their mobility and range it seems likely they would have been present to the north of the Sahara also. But none have ever yet been found. As it stands, humans were at Dmanisi by 1.78 million years ago and also in Java by that time. The extent of human migration outside of Africa makes it clear that the Mediterranean coast of Africa itself should have been well within their range.

And yet, stone tools are known from Ethiopia from 2.6 million years ago, and nearly as old in Kenya. Did the earliest stone toolmakers range beyond the Rift Valley? So far there's no equivalently early evidence of tool manufacture in South Africa. And in North Africa, the earliest tool assemblage is at El-Kherba.

It would sure be useful to uncover evidence of A. boisei or related robust australopithecines in the Ain Hanech area. In East and South Africa, early Homo lived alongside late robust australopithecines, sharing the same landscape. No robust australopithecine has ever been found outside East or South Africa, while Homo erectus spread across the Old World tropics and into the temperate zone. What kept robust australopithecines, otherwise seemingly adaptable, out of Eurasia? If they truly never lived near the Mediterranean coast, we would probably conclude that they weren't as tolerant of different habitats as we might have expected.

The cutmark evidence described in the paper is fairly clear and comparable to that known from East Africa well before this date. The cutmarks on animal bones, including hippopotamus, along with a "meat polish" on some of the stone flakes, indicate that ancient humans had access to animal carcasses very shortly after the animals' death and were using stone flakes to process them. Again, basically like Oldowan evidence that has long been known from Olduvai Gorge and other sites. I would like to see a better comparison of where this assemblage fits compared to both large and small archaeological assemblages from Olduvai.

The question of whether and to what extent early humans hunted large mammals involves a long debate that wouldn't fit well in this paper. Still, the evidence here adds to that literature. The ancient people who left these remains were relying upon large mammal acquisition within a broader hunted diet including smaller prey species. Together with sites from across Africa and Eurasia, this one shows that early humans maintained this diet pattern across a range of ecologies and geographies.


References

Who does worse in online courses, students or professors?

Thu, 2013-03-07 22:35 -- John Hawks

The Raw Story reports on a new study of 40,000 community college students in Washington state, which concludes that online courses are not as effective as classroom-based courses for this student population: "Research shows everyone does worse with online learning". In particular, the story emphasizes that minorities and men do worse in the online setting.

“We found that what the students really wanted more of was a connection with their instructor. They wanted more guidance from their instructor. They wanted their instructor to be able to help motivate them with their passion and their caring for their students and how the students did,” Jaggars continued. “The thing about college students, you know, they come in with a lot of anxiety and insecurity about whether college is the right place for them, whether they can do this kind of work, they need an instructor that’s really supportive and enthusiastic about the material and communicates that enthusiasm to the students.

“If you think about a MOOC, you know, 200,000 students, and one instructor, I’m not really sure how that, you know, how that connection can be made,” Jaggars said.

Apples to oranges, I would say. A massively open online course (MOOC) is not going to replace small group instruction for students whose motivation is low. Nor will they replace small group instruction for motivated students in very specialized areas. There is a process of "learning how to learn" in college.

What I find interesting is how professor-focused this model of learning actually is. Appearing today in Inside Higher Ed is an essay by Andrew Ng, one of the founders of MOOC purveyor Coursera: "Learning from MOOCs". He emphasizes that professors who adapt their material to the MOOC format discover just how much they have been doing in the classroom that really isn't about learning the material:

Adelman discovered that in putting his course online, he became more focused on what students are experiencing, even though he wasn’t in direct contact with them. “When I lectured, I had to ask myself at all times ‘What is it that I want my students to learn?’ In the old-fashioned lecture hall I was an entertainer, more self-focused rather than teaching-focused, but I was not conscious of this dynamic until I put a course online for the first time,” he says. “For me, the lectures alone were a source of continuous learning and adaptation.”

If we take seriously the idea that students learn in different ways, that they come to us with different skills and competencies, then we must recognize that some will be cheated by any mode of delivery. Being "an entertainer" in a lecture hall is a great way to reach some students, to communicate enthusiasm with the subject. Others will be turned off by this style, will wonder why they are paying to listen to this professor who loves the sound of his own voice.

MOOCs and other online courses today are reinventing lots of wheels. For example, creating compelling lecture-centered content is a storytelling and film editing problem, not specifically a lecture problem. Finding good solutions that will work in courses is a matter of bringing in expertise from these specialties.

But one area where today's MOOCs are experimenting with genuinely new innovations is in the way that students interact with each other. When we consider the differences between an online course and its classroom equivalent, the professor really is not much of a difference. The biggest difference is the number and pattern of contact with other students. Some students do great in isolation, but others work better in a group. A course that shapes the pattern of online interactions among students thereby shapes the way they can learn from each other's progress. But how?

But through today's technological advancements, online courses are very much alive. They are part of an ecosystem that, if nurtured through community discussion forums, meetups, e-mails, and social media (like Google+ hangouts), can flourish and grow. This allows each class’s community to take on a life of its own, with a distinct culture that’s defined at least as much by the students as the instructor, and which even skillful instructors can only guide, but not control. Nearly every instructor that I’ve spoken to has been surprised by the deep desire of students to connect with each other as well as with the teaching staff and professor.

Lots of different modes of interaction, different courses experimenting with different patterns. Some online courses have a huge range of student interactions, from total self-study to the creation of real-life meet-ups to discuss the course. Others have had notable failures, from total crashes of online commenting systems to abusive students writing anonymously on course message boards.

I am very excited about the potential of technology to create new modes of teaching. I think that online presentation can reach new communities of learners who are not served by universities or community colleges, but who are no less deserving of great learning opportunities. But creating these new learning environments will inevitably siphon off some people who previously could only obtain college-level educational opportunities at great financial expense.

At the same time, I am skeptical about effectiveness of online content. The range of experimentation now is very wide. That shows that there are lots of attempts at innovation, but very little selection favoring the best approaches. We need rigorous attempts to outline the conditions in which particular online communities facilitate learning.

The Neandertal treatment

Thu, 2013-03-07 10:55 -- John Hawks

Virginia Hughes, in National Geographic News, takes on the subject of whether we will someday clone Neandertals: "Return of the Neanderthals". She gets into the technical issues a bit and discusses George Church's book Regenesis, which touched off the Neandertal cloning discussion earlier this year.

Toward the end of the article, I get to share some of my own thinking about the utility of Neandertal biological discoveries:

Neanderthals' climate, diet, and disease exposures were not the same as those of our ancestors, and left different adaptive marks on their genome. And yet Neanderthals are far more similar to modern humans than the animals commonly used to study disease, such as fruit flies and rodents.

"There are issues that humans have now, where it's very plausible that Neanderthal biology might actually show us something," Hawks says. "Our knowledge of the evolutionary process could guide us toward possible treatments."

This is a message I've been sharing with public audiences for the last year. Our knowledge about human evolution is now shaping the way we approach medicine and health in ways we never could have imagined ten years ago. It's inspiring to know that paleoanthropology has begun to really matter in human biology.

Shipwrecked Wallace

Thu, 2013-03-07 10:33 -- John Hawks

Jerry Coyne has a guest post today by Andrew Berry, who recounts an episode in the early life of Alfred Russel Wallace: "The most poignant episode in all of the history of science".

“When the danger appeared past I began to feel the greatness of my loss. With what pleasure had I looked upon every rare and curious insect I had added to my collection! How many times, when almost overcome by the ague, had I crawled into the forest and been rewarded by some unknown and beautiful species! How many places, which no European foot but my own had trodden, would have been recalled to my memory by the rare birds and insects they had furnished to my collection! How many weary days and weeks had I passed, upheld only by the fond hope of bringing home many new and beautiful forms from these wild regions … which would prove that I had not wasted the advantage I had enjoyed, and would give me occupation and amusement for many years to come! And now … I had not one specimen to illustrate the unknown lands I had trod, or to call back the recollection of the wild scenes I had beheld! But such regrets were vain … and I tried to occupy myself with the state of things which actually existed.”

It's a tremendous story in the history of science, illustrates the difficulties faced by nineteenth-century naturalists as they explored the tropics for new biological knowledge, and reminds us how lucky we are to be able to back up our data as we work.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.