john hawks weblog

paleoanthropology, genetics and evolution

Public engagement and science productivity

Sun, 2013-02-17 16:24 -- John Hawks

I was pointed yesterday to a paper by Pablo Jensen and colleagues on the relationship between outreach activity and academic productivity [1]:

Scientists who engage with society perform better academically

Most scientific institutions acknowledge the importance of opening the so-called 'ivory tower' of academic research through popularization, industrial collaboration or teaching. However, little is known about the actual openness of scientific institutions and how their proclaimed priorities translate into concrete measures. This paper gives an idea of some actual practices by studying three key points: the proportion of researchers who are active in wider dissemination, the academic productivity of these scientists, and the institutional recognition of their wider dissemination activities in terms of their careers. We analyze extensive data about the academic production, career recognition and teaching or public/industrial outreach of several thousand of scientists, from many disciplines, from France's Centre National de la Recherche Scientifique. We find that, contrary to what is often suggested, scientists active in wider dissemination are also more active academically. However, their dissemination activities have almost no impact (positive or negative) on their careers.

I think this is a little old now (from 2008) and it would be useful to track down subsequent treatments. Also, the CNRS is probably not the best model for scientists in other systems. An important confounding variable is the amount of teaching that scientists do, which may increase outreach in some ways (by requiring regular practice communicating with students) but takes time away from some opportunities for public engagement.


References

MOOC conversations

Sun, 2013-02-17 16:15 -- John Hawks

An article on the way MOOCs are (or may be) changing university priorities: "What MOOCs Will, Won’t, and Might Do".

He says many faculty members have been more focused on research instead of teaching in the past. Open education classes are changing that. Because of MOOCs and Princeton’s upcoming participation in Coursera, “The conversations about teaching (at Princeton) have gone from 0 to 60 on our campus,” he says. Princeton faculty who used to brush off discussions geared toward improving their teaching are now eager to have such discussions, he says.

Much discussion of this concept around right now. I think that there is great potential here, to redirect resources to allow each faculty member to teach the material in which she or he is most expert, and to enable students to learn introductory material from the best teachers. But that would really take a shift away from the idea that you need a single faculty member in the classroom 3 hours a week for a whole semester.

The scope of bonobos

Sat, 2013-02-16 16:26 -- John Hawks

National Geographic has an excellent article by David Quammen about the science of bonobo behavior: "The Left Bank Ape: An Exclusive Look at Bonobo Behavior". Much has been made of the contrast between chimpanzee and bonobo behavior, often centered around the question of which of these two closest human relatives might be the better model for hominin origins. In reality, the Anthro 101 version of bonobo behavior radically oversimplifies their behavioral variation. As Quammen discusses, bonobo behavior in the wild holds some surprises for students enamored of the simplistic sex primate story.

That afternoon Hohmann and I sat beneath one of the thatch roofs discussing bonobo behavior. Few other researchers have seen bonobos in the act of predation, and those few reports generally involve small prey such as anomalures (only at Wamba) or baby duikers. Animal protein, insofar as bonobos get any, had seemed to come mainly from insects and millipedes. But Fruth and Hohmann reported nine cases of hunting by bonobos at Lomako, seven of which involved sizable duikers, usually grabbed by one bonobo, ripped apart at the belly while still alive, with the entrails eaten first, and the meat shared. More recently, here at Lui Kotale, they have seen another 21 successful predations, among which eight of the victims were mature duikers, one was a bush baby, and three were monkeys. Bonobos preying on other primates: “This is a regular part of the bonobo diet,” Hohmann said.

Sexiness, on the other hand, seemed to him less manifest than others, such as de Waal, had claimed. “I could show Frans some of the behaviors that he would not think are possible in bonobos,” Hohmann said. Infrequent sex, for instance. Yes, there’s a great diversity of sexual acts in the bonobo repertoire, but “a captive setting really amplifies all these behaviors. Bonobo behavior in the wild is different—must be different—because bonobos are very busy making their living, searching for food.”

Understanding the behavioral flexibility of both bonobos and chimpanzees is hugely important to the science of human origins. Meanwhile the continuing habitat loss and bushmeat trade threaten these creatures survival. Bonobo numbers remain fewer than 20,000 today. Their present genetic diversity is more comparable to the pattern of human variation than are chimpanzees, gorillas or orangutans. In that respect, at least, they may be the best primate model for our recent evolution. Hopefully genomics will begin to yield insights about the basis of bonobo-chimpanzee behavioral variation, which might open new doors to understand the evolution of the human brain.

Surpassing our evolutionary scars

Sat, 2013-02-16 16:16 -- John Hawks

Ann Gibbons covers a session at the meetings of the American Association for the Advancement of Science, titled, "The Scars of Human Evolution" ("Human Evolution: Gain Came With Pain"). The session was organized by Rachel Caspari and Karen Rosenberg, and included some great talks. For example, Bruce Latimer, who is always excellent in describing the trade-offs of bipedalism for long-term skeletal health:

Turning up the pain threshold a notch, anatomist and paleoanthropologist Bruce Latimer of Case Western Reserve University in Cleveland limped to the podium, dangling a twisted human backbone as evidence of real pain. “If you want one place cobbled together with duct tape and paper clips it’s the back,” said Latimer, a survivor of back surgery.

...

In the United States alone, 700,000 people suffer vertebral fractures per year and back problems are the sixth leading human malady in the world. “If you take care of it, your spine will get you through to about 40 or 50,” says Latimer. “After that, you’re on your own.”

The session was based on the 1951 article by Wilton Krogman, likewise titled, "The Scars of Human Evolution". In honor of the session, Scientific American has made the article available for download for a short time. In some ways, this article was the impetus for what we now call "evolutionary medicine".

Asteroid defense: think small

Sat, 2013-02-16 15:08 -- John Hawks

Rand Simberg: "Should NASA Be Doing More Asteroids?"

In fact, it’s not at all clear that NASA is the right place for this to happen, particularly given all its organization dysfunction. I would submit that there is currently no government agency chartered to protect the planet. I think I’m going to write up an op-ed or two declaring that it’s time to fundamentally reorganize the federal space establishment, including the formation of the Space Guard.

When I hear "Space Guard", I imagine NASA as implemented by the staff of Homeland Security.

Seems to me the fastest way to get effective planetary defense is large-scale asteroid micromining. I was skeptical about the practicality of the asteroid micromanufacturing idea I mentioned here last month ("Autonomous asteroid manufacturing"). But suppose we had a company with the technical ability to ship an indefinite number of 70 kg payloads from the asteroid belt to Earth. That company has everything needed to fling an indefinite number of 70 kg impactors from the asteroid belt at another asteroid in a lower, Earth-intersecting orbit.

This is essentially the same idea as the "kinetic bombardment" concept for space weapons -- inert masses that strike targets at orbital velocity, nicknamed "rods from God". Instead of having to launch all that mass from Earth up to escape velocity, the scheme can use a huge amount of mass already at higher orbital energy, using autonomous manufacturing to package the mass with devices that can decelerate into an intercept orbit. Assuming a lead time of a few years, this ought to be a lot cheaper and more flexible than any Earth-based solution, and it has the side effect of providing material and goods for wider space colonization.

The best reason to manufacture things in space is so that you can use them in space, after all.

Photo: Qafzeh 11 and Qafzeh 9

Wed, 2013-02-13 16:48 -- John Hawks

This week I've been at the Vienna Natural History Museum to do some work. It's one of the great museums of the world, and they have a new human evolution exhibition with several great reconstructions of fossil specimens by Elizabeth Daynès. Several original hominin skeletal specimens are here on loan for a short time, including these:

Qafzeh 11 and Qafzeh 9, Vienna Natural History Museum

Those are Qafzeh 11 and Qafzeh 9 from the Middle Paleolithic of the Levant, around 90,000 years old.

The monkey midwife

Wed, 2013-02-13 10:35 -- John Hawks

A new paper describes a case of a monkey mother having her birth assisted by another monkey -- in other words, a monkey midwife [1]. Kambiz Kamrani describes the paper well:

The head, once fully exposed, was grabbed by the midwife, who pulled the baby out with both hands. She progressed to rip open the birth membranes. The new mother reclaimed the infant within a minute, and severed the umbilical cord. She ate the placenta as the midwife descended.

Black snub-nosed monkeys are Old World monkeys (cercopithecoid primates) native to China. I think this is cool not because it shows that monkeys need midwives (they don't) but because it shows that the behavioral flexibility that may have enabled midwifery in early humans is very extensive among primates. A delicious placental incentive may seem inventive, but humans are mystifyingly strange in being among the few mammals who don't regularly consume the placenta after birth.

Primate births are still rarely enough observed that the comparative dataset is quite small. As field studies extend this area of observation more broadly, we may yet discover more behavioral flexibility in different primates.


References

Napoleon Chagnon profile

Wed, 2013-02-13 07:36 -- John Hawks

The New York Times has a very long and informative profile of Napoleon Chagnon, written by Emily Eakin: "Napoleon Chagnon, America's Most Controversial Anthropologist". The profile is in connection with Chagnon's upcoming book, Noble Savages: My Life Among Two Dangerous Tribes — the Yanomamö and the Anthropologists. The piece does a very nice job of summarizing Chagnon's work, its importance in the field, and how he came to be vilified by many cultural anthropologists of his generation.

It's full of good paragraphs, and I'm choosing to quote this passage because I love the last sentence:

Under the influence of Derrida and Foucault, cultural anthropologists turned their gaze on their own “texts” and were alarmed by what they saw. Ethnographies were not dispassionate records of cultural facts but rather unstable “fictions,” shot through with ideology and observer bias.

This postmodern turn coincided with the disappearance of anthropology’s traditional subjects — indigenous peoples. Even the Yanomami were becoming assimilated, going to mission schools, appearing on television in Caracas and flying to the United States to speak at academic conferences. Traditional fieldwork opportunities may have been drying up, but there was still plenty of work to do exposing anthropologists’ complicity in oppressing “the other.” As one scholar in the journal Current Anthropology put it, “Isn’t it odd that the true enemy of society turns out to be that guy in the office down the hall?”

An all-too-common tale. The profile is a good way for students and others who may not know the historical background to understand this part of the history of anthropology. Recommended.

Microchimerism and selection

Sat, 2013-02-09 11:37 -- John Hawks

A recent article in Scientific American by Robert Martone explains some recent research on how fetal cells become integrated into mothers' brains for the long term: "Scientists Discover Children’s Cells Living in Mothers’ Brains"

In this new study, scientists observed that microchimeric cells are not only found circulating in the blood, they are also embedded in the brain. They examined the brains of deceased women for the presence of cells containing the male “Y” chromosome. They found such cells in more than 60 percent of the brains and in multiple brain regions. Since Alzheimer’s disease is more common in women who have had multiple pregnancies, they suspected that the number of fetal cells would be greater in women with AD compared to those who had no evidence for neurological disease. The results were precisely the opposite: there were fewer fetal-derived cells in women with Alzheimer’s. The reasons are unclear.

Sometimes people wonder what HLA is really for. Once in a while, having someone else's cells inside you isn't quite as harmless as the case discussed here. Being able to recognize your own cells may be your only means of defense.

The kind of microchimerism described here lasts throughout a woman's postreproductive lifespan. The strength of selection varies across this timeframe. It was logical to hypothesize that the cells might have negative side effects on fitness, such as Alzheimer's risk, that manifest late in life. Mothers must suppress their immune responses to some extent during pregnancy, to avoid health risks to the developing embryo and fetus. That suppression cannot be cost-free; if it were, we would expect everybody to tolerate human foreign bodies as well as expectant mothers. Having roaming stem cells integrate themselves into neural tissue must not be good on average; if it were, we would have cells crawling their way into our brains all the time.

I bet those cells worm their way into the brain so that your mother will love you better. The only thing wrong with that hypothesis is that it can't explain grandmas.

Credit, yes. Credit reel, no.

Sat, 2013-02-09 09:42 -- John Hawks

A thought-provoking post on an aspect of presentation style by Josh Schimel: "Why do people blow the punchline in scientific talks? The destructive effect of acknowledgements slides".

The growth of acknowledgements slides is a Powerpoint effect. In the days of slide projectors, slides cost money so no one bothered with acknowledgements. But since images have become free, the tradition from papers of including acknowledgements percolated into presentations. But in a paper, acknowledgements are a postscript that readers can (and usually do) ignore. In a talk, there is no ignorable postscript—the last slide is part of the talk and should be reserved for your concluding take home message.

I never use acknowledgement slides; I always refer directly to my coworkers when I'm describing the work. Frankly I don't think that having your name listed on a slide that no one has time to read is much of an acknowledgment.

But Schimel's message depends on the idea that the acknowledgments slide detracts from time that could otherwise be allocated to the talk's conclusions. I disagree with the premise that a "conclusions" slide is worthwhile. Conclusions should be manifest from the way that the talk is organized and delivered. If your audience are reading your conclusions on a slide, they will be distracted from listening to you. Good storytelling is not done by bullet point!

(via Sandwalk)

Scholarship and experience outside the academy

Thu, 2013-02-07 11:27 -- John Hawks

The Wall Street Journal has an inspiring story of a hairdresser who turned her curiosity about Roman hairstyles into novel scholarship: "On Pins and Needles: Stylist Turns Ancient Hairdo Debate on Its Head".

In 2007, she sent her findings to the Journal of Roman Archaeology. "It's amazing how much chutzpah you have when you have no idea what you're doing," she says. "I don't write scholarly material. I'm a hairdresser."

John Humphrey, the journal's editor, was intrigued. "I could tell even from the first version that it was a very serious piece of experimental archaeology which no scholar who was not a hairdresser—in other words, no scholar—would have been able to write," he says.

Ms. Stephens' article was edited and published in 2008, under the headline "Ancient Roman Hairdressing: On (Hair)Pins and Needles." The only other article by a nonarchaeologist that Mr. Humphrey can recall publishing in the journal's 25-year history was written by a soldier who had discovered an unknown Roman fort in Iraq.

There is so much room in archaeology for people with deep subject knowledge, but not necessarily archaeological training, to make original contributions. Last night's NOVA episode, with a group of people trying to reconstruct Egyptian chariots, is another case where an ancient tradition can only be examined by those with insights about the subject beyond the historical and archaeological record -- in this instance, how to get a team of horses to work together using bridles, bits and yokes that no one had seen used in more than 2000 years.

One of the great potential strengths of online media and open access is to enable this kind of participation by non-academicians. I'm hoping to capture some of that enthusiasm and knowledge in an upcoming project.

(via Charles Mann)

Privacy of genetic research participants

Thu, 2013-02-07 00:01 -- John Hawks

Misha Angrist, writing in Nature News comments ("Genetic privacy needs a more nuanced approach") on the recent study that demonstrated the possibility of finding the true identities of research participants who provided anonymized DNA samples [1]. Adding some context to the study, Angrist discusses the current federal privacy regime, and the way that genetic research relies upon the anonymizing techniques now shown to be insecure:

Although genetic data are considered protected health information under the HIPAA, many of the protections disappear when the information is ‘de-identified’ — that is, the 18 identifiers specified in the act (including names, addresses, birthdates and the like) are removed. And because genetic information is not one of those 18 identifiers, it does not need to be removed from health records to follow the letter of HIPAA privacy. If researchers do not know who you are, and cannot easily find out, then their obligations to you diminish by orders of magnitude. Furthermore, their protocols are less likely to need full review by an institutional review board; their grant applications become less onerous; and their technology costs go down.

...What if the absence of the 18 identifiers isn’t enough to protect someone’s identity?

If genotyping becomes sufficiently cheap, and personal information sufficiently interlinked within corporate or government databases, then personal identification of genetic samples will be ubiquitous. The constraint on ubiquitous identification is not the cost of genotyping, which is already cheap enough for anyone motivated to identify a sample. The remaining constraint is the interlinking of databases.


References

Quote: Inconsistencies of anthropological theory

Wed, 2013-02-06 23:39 -- John Hawks

Courtesy of a Twitter exchange, I was reading Stanley R. Barrett, who in the introduction to his 1984 book, The Rebirth of Anthropological Theory, considers an essential problem: As of 1984, anthropological theory seemingly hadn't gotten any better at explaining social phenomena, despite more than a century of trying.

Just as sociologists take refuge behind methodology in order to avoid dilemmas in their discipline, anthropologists slip off to the field, the enormous challenge of which soon drives away all other problems.

I didn't escape quickly enough, and the deeper I delved into the history of anthropological theory, the more inconsistencies I discovered. Scientific knowledge supposedly is cumulative, yet our theoretical orientations have oscillated between polar positions, advancing, repeating, and retracting, but rarely achieving progress. Our methodology rests on the assumption of an orderly universe; yet social life is essentially contradictory, although disguised by numerous mechanisms. A great deal of anthropological analysis has mistaken these mechanisms for underlying reality, which means that the discipline has itself contributed to a distorted view of behaviour. Since its beginnings, anthropology has expressed a dream, a hope for a universe without hate, rancour, or racism, in which the peoples of the world would live together in harmony. Yet it also has aspired toward science, even at the expense of the dream, and the result has sometimes been a discipline that has lost the capacity for moral judgment.

I don't usually editorialize in my "quotes" posts, but every time I read through this quote, the last two sentences irritate me. The reference to racism and colonialism is transparent, but even so I object. "Aspiring toward science" did not cause anthropologists to "lose the capacity for moral judgment".

Mary Leakey Google doodle

Wed, 2013-02-06 08:05 -- John Hawks

Today, Google is featuring archaeologist Mary Leakey in its first-ever paleoanthropology Google doodle:

Google doodle honoring Mary Leakey

There she is, finding some Laetoli footprints with some remarkably well-defined toes, with her dalmatians at hand. Today would have been Leakey's 100th birthday.

Phrenology, race and history

Tue, 2013-02-05 22:01 -- John Hawks

The movie Django Unchained includes a scene in which the antagonist (a rich, white, plantation owner) expounds on phrenology as a justification of slavery. James Poskett in The Guardian gives the historical context behind racist phrenology. The interesting part is the existence of anti-racist phrenology:

[I]t wasn't just the slavers. My research revealed that some of the most vocal anti-slavery campaigners of the 19th century were also advocates of phrenology, and used it to justify their stance.

Lucretia Mott, a particularly uncompromising American abolitionist, sent her children to phrenological lectures and spoke of the "truth of phrenology" in letters to friends. When she visited Britain she stayed with the renowned Scottish phrenologist George Combe, himself an anti-slavery campaigner. Horace Mann, another major figure in abolitionist politics, was so keen on phrenology that he subscribed to the official journal. After becoming president of Antioch College in Ohio, he even boasted in the same sentence that the professors he employed were both "anti-slavery men" and "avowed phrenologists".

The relation between science, pseudoscience, and highbrow morality in the nineteenth century was counterintuitive. Phrenologists were steampunk witchdoctors.

Notes from the learning revolution

Fri, 2013-02-01 00:45 -- John Hawks

My University of Wisconsin colleague Kris Olds has been writing about the international dimensions of massively open online courses (MOOCs). A recent entry ("Memo to Trustees re: Thomas Friedman’s ‘Revolution Hits the Universities’") reflects on an op-ed by the NY Times columnist. Olds discusses the hope behind MOOCs that they will bring education to the world, including massive numbers who cannot afford traditional college education, and puts this claim into the current economic context:

We are now in a new (normalized) normal, at least in the US, where austerity is accepted and indeed viewed positively for it can be perceived as a mechanism to restructure higher education systems and institutions. In short, we are arguably (as noted by Dean Martin McQuillan in an article in Times Higher Education magazine) not in a state of ‘crisis’ as ‘crisis’ infers a cyclical dimension to the challenges facing the financing of higher ed. Austerity (the strategic and systematic reduction of state-financing levels), in combination with the contradictory/ironic desire to ramp up state governance power (including about online education and associated credentialing), is the new normal and this is what Friedman, amidst all his hype about MOOCs and online education, utterly fails to flag.

His earlier entries on localization of MOOCs in a global context are well worth reading, including an entry on the new effort by the UK's Open University ("Are MOOCs becoming mechanisms for international competition in global higher ed?"), in which Olds lists the U.S.-heavy list of universities that have thus far entered the MOOC arena.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.